Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00923 ATGACGAGCTTTACAAATCCAATAATGACAACCACCTGCCCTCACAGAGAAGCAGATGAAACTGCCATTGAAAAGGATACCATCAAGGGAATCACCAAAATTTATCCAAGAGGATTTAACATCACATGGGGCAATGATGATCGCTATTGGAGTATCACCAACCCAAATGTGCCAGGAAGTTTGTACATTGCAGAGCTGAAGCAAGTTTCATGGCTTGAAGTGACATGTTCAACTGATAATGTACAAATTGGTAATAAGTATAGAGTGGGTTTCAATATAACAATGAGACCAGATGCATTTGGGTGGGATGAGATTGATGTTTATGTAATGGCTAAGGTTGGGAAGAAAGGGAAGTTCATGTCCATGAAAGTTTCTCTTGGAGACATAAAACCAAATCTTAAACCTATCACCATCCCCAAGGAGCCCTTAGTAATCCCAGTTGATCCTTTAACACCCAAAGAGTTCAAGACCATCCATCTCGGTTTGTATGAAGTTTGGAGTTCAAAGTGGAAGGGAGGATTGCAGATCCATGATGCATTCGTTCAGAAGGTTGCCTAA 558 40.86 MTSFTNPIMTTTCPHREADETAIEKDTIKGITKIYPRGFNITWGNDDRYWSITNPNVPGSLYIAELKQVSWLEVTCSTDNVQIGNKYRVGFNITMRPDAFGWDEIDVYVMAKVGKKGKFMSMKVSLGDIKPNLKPITIPKEPLVIPVDPLTPKEFKTIHLGLYEVWSSKWKGGLQIHDAFVQKVA 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12771876 12773372 - ClCG01G009290.2 Cla01g00923 264512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00923 185 Pfam Phloem protein 2 34 180 IPR025886 -
Cla01g00923 185 PANTHER - 21 181 - -
Cla01g00923 185 PANTHER PROTEIN PHLOEM PROTEIN 2-LIKE A9 21 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00923 - - - csv:101222726 296.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00918 Cla-Chr1:12479644 Cla01g00923 Cla-Chr1:12771876 2.54E-53 dispersed
Cla01g00923 Cla-Chr1:12771876 Cla01g02519 Cla-Chr1:38873551 4.58E-38 dispersed
Cla01g00922 Cla-Chr1:12760513 Cla01g00923 Cla-Chr1:12771876 1.39E-47 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g153 . . . . . . . . . Cmo18g00529 . Cma18g00549 . . . Cpe09g00689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00923 Cam01g0951 Cec01g0954 Cco01g0992 Clacu01g0952 Cmu01g0910 Cre01g0842 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000268 1 5 1 1 1 6 6 6 6 4 6 6 4 4 6 4 6 2 6 6 5 5 5 7 10 5 4 9 8 3 148
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00923 Cla_Chr01 FPKM 2.373061 2.507128 0.254669 0.0 1.470259 1.013685 1.421304 3.854079 3.507485 3.884243