Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00925 ATGGAGAGCAGCGAAGAGGAAGATGATTTCCCATCTATCGAGAGCATCATTCCGCAGTCCAAGGTTGATTCTCTCTACCAATCACACACTGAACAGGGAATTAGAAGACTGTGCTGTGAACTCATGGATTTAAAGGATGCTGTGGAGAACTTATGTGGGAATATGCAGACCAAGTATCTGGCTTTTCTAAGGATATCTGAAGAGGCTGTGGAGATGGAACATGAGTTGGTTGAGCTGCGGAAACATATTTCATCTCAAAGGATTCTAGTGCAAGATCTAATGACTGGTGTATGTCATGAGTTAGAACAGTGGAACCAATCTAATGATGGCACTGATGAAGTTAAGGATGGTGAAAAAAGTTATGACCCTCAAGATTCCTTGTTGAAATTGGAAGATGGTCACAATGTGGTATTTCTTGAGAATGTTGACATCCTTTTAGCTGAGCATAAAACCGAAGAAGCACTGGAGGCTTTAGATGCAGAAGAGAGAAATTCTCCAGAGCTCAAAGCAACTGGGGAAATTTCAGCCGAAATGTCATCGTACAAATCTGCATTCTTGAAACGCAAAGCTATGCTTGAGGAACAATTGATTGAAATTGCCGAACAACCTTTTGTAAACCTTCTTGAGCTTAGAAAGGCCTTGTCTGGTTTATTAAGACTCGGTAAAGGTTCTTTGGCTCATCAATTACTGCTCAAGTCCTTAGGATCTCGTCTTCAAAGGAGCACCTCGGCTTTTCTTCCTTCATGTGCTGCTTGCCCAAAGACGTTTTCAGCTACTTTGAGTAAGCTTGTATTTTCTGCAATTTCGTTGGCAACAAAAGAATCTGCTTCAATTTTTGGTGATGATCCCATTTACACANTCCCGCCATCAGATCCAAAGATCTTGGGCTCTAATATCAGTTGGTGTAAAACCAATTCTGGGAGTAAAATTCTCAATTCAATTCTATATTATGAGGGAAGGGGGAAGCCTATTATTTATTGGCAAAGGAAAACAGTTCCAGGGTGCACGATATCTGAAGAGGCTGTGGAGATGGAACATGAGTTGGTTGAGCTGCGGAAACATATTTCATCTCAAAGGATTCTAGTGCAAGATCTAATGACTGGTGTATGTCATGAGTTAGAACAGTGGAACCAATCTAATGATGGCACTGATGAAGTTAAGGATGGTGAAAAAAGTTATGACCCTCAAGATTCCTTGTTGAAATTGGAAGATGGTCACAATGTGGTATTTCTTGAGAATGTTGACATCCTTTTAGCTGAGCATAAAACCGAAGAAGCACTGGAGGCTTTAGATGCAGAAGAGAGAAATTCTCCAGAGCTCAAAGCAACTGGGGAAATTTCAGCCGAAATGTCATCGTACAAATCTGCATTCTTGAAACGCAAAGCTATGCTTGAGGAACAATTGATTGAAATTGCCGAACAACCTTTTGTAAACCTTCTTGAGCTTAGAAAGGCCTTGTCTGGTTTATTAAGACTCGGTAAAGGTTCTTTGGCTCATCAATTACTGCTCAAGTCCTTAGGATCTCGTCTTCAAAGGAGCACCTCGGCTTTTCTTCCTTCATGTGCTGCTTGCCCAAAGACGTTTTCAGCTACTTTGAGTAAGCTTGTATTTTCTGCAATTTCGTTGGCAACAAAAGAATCTGCTTCAATTTTTGGTGATGATCCCATTTACACAAATAGAGTTGTTCAGTGGGCTGAATGGGAAATTGAATTCTTTGTACGATTGGTGAAAGAGAATGCACCATCTTCTGAGACAGTGTCTGCTCTGCGTGCAGCTAGCATATGCATACATGCTAGTCTTAATTATTGTTCATTATTGGAAACACAAGGCTTGAAACTGTCAAAGCTACTTTTGGTGCTTTTGCGGCCTTTTATGGAAGAAGTTTTGGAGTTGAATTTCCGGAGAGCTAGGAGAGGCATTCTTGACTTGGCTGAGCCTGATGATAACTTTGTATTATCATCTCGCTTTGCGTCGTCATTGTCTCCGTTTTTGACATCCTCAGATAGTCTGCTTGTGGTTAGTGGGATGAAGTTCATGCACATTGTTGATGATATACTGGAACAGCTGACATCATCAGCGATTTTTCATTTTGGAGGCAACGTCTTAAATAGAATTTCTCAGTTATTTGATAAGTACATGGACGCCCTACGCAAAACACTACCAGGCCCCTCGGATGATGAAAATCTTACAGAATTAAAGGAGGCTACACCCTTTAGAGTTGAAACTGATTCCGAAAAGTTAGCGATTCTCGGTATAGCATTTACCATTATGGATGAACTTTTACCAGATGCTGTGATGACCATCTGGAAACGGCAGGATGAATTAGTCCAGAAGAATGCTGGAAGTTCTGTTGAACTGAAGGATTGGAAGCGTCATCTTCAAGTATCATTTGACAAGCTTAGAGATCACTTCTGCCTCCAATATGTGTTGAGTTTCATATATTCAAGAGAAGGCAAAACAAGATTAGATGCATGGATCTATATAAATGGGGATGGAGAGGATCTTCATTGGGGTTCTGATCCTCGTCCATCACTTCCATTTCAGGCACTATTTGCAAAATTGCAACAGTTGGCAACTGTTGCAGGAGATGTCTTGCTTGGGAAAGAGAAAATACAAAAGATTTTGCTTGCTAGGCTGACAGAGACCTTCCTTATCTGGTTGTCTGATGACCAGGAGTTTTGGGGCGTTTTTGAAGATGATTCAATTAATCTTCTGCCTTTTGGTTTGCAGCAGTTAATTCTTGATATGCACTTCACCGTCGAAATAGCACGTTTTGCTGGTTACCCGTCTCGTCAAATCCATCAGATTGCTTCTGCCATTATTGCTCGTGCAATCAGGACGTTTTCTGCTAGAGGCATTGATCCACAAAGAAAAACTGAACTACTATCCCTGATTAGTGCACTCCCTGAGGATGAATGGTTTGTTGAAACTGCCAAGTCTGCAATAAACAAACTGCTTGGAGTTGATGGGTCTGATGGTTCTGAGATCGATGATGATCACATTATTCTCCATGACGACAATGTCTCGGATTCAGATGATACTACATCCTCTCTTTCAACACTAGAATCCACAGAGTCTTTTGCCTCTGCAAGTATGGGAGAACTTGAGAGTCCATCCGATCTCACCGATTCTGAGAACTAG 3141 41.23 MESSEEEDDFPSIESIIPQSKVDSLYQSHTEQGIRRLCCELMDLKDAVENLCGNMQTKYLAFLRISEEAVEMEHELVELRKHISSQRILVQDLMTGVCHELEQWNQSNDGTDEVKDGEKSYDPQDSLLKLEDGHNVVFLENVDILLAEHKTEEALEALDAEERNSPELKATGEISAEMSSYKSAFLKRKAMLEEQLIEIAEQPFVNLLELRKALSGLLRLGKGSLAHQLLLKSLGSRLQRSTSAFLPSCAACPKTFSATLSKLVFSAISLATKESASIFGDDPIYTXPPSDPKILGSNISWCKTNSGSKILNSILYYEGRGKPIIYWQRKTVPGCTISEEAVEMEHELVELRKHISSQRILVQDLMTGVCHELEQWNQSNDGTDEVKDGEKSYDPQDSLLKLEDGHNVVFLENVDILLAEHKTEEALEALDAEERNSPELKATGEISAEMSSYKSAFLKRKAMLEEQLIEIAEQPFVNLLELRKALSGLLRLGKGSLAHQLLLKSLGSRLQRSTSAFLPSCAACPKTFSATLSKLVFSAISLATKESASIFGDDPIYTNRVVQWAEWEIEFFVRLVKENAPSSETVSALRAASICIHASLNYCSLLETQGLKLSKLLLVLLRPFMEEVLELNFRRARRGILDLAEPDDNFVLSSRFASSLSPFLTSSDSLLVVSGMKFMHIVDDILEQLTSSAIFHFGGNVLNRISQLFDKYMDALRKTLPGPSDDENLTELKEATPFRVETDSEKLAILGIAFTIMDELLPDAVMTIWKRQDELVQKNAGSSVELKDWKRHLQVSFDKLRDHFCLQYVLSFIYSREGKTRLDAWIYINGDGEDLHWGSDPRPSLPFQALFAKLQQLATVAGDVLLGKEKIQKILLARLTETFLIWLSDDQEFWGVFEDDSINLLPFGLQQLILDMHFTVEIARFAGYPSRQIHQIASAIIARAIRTFSARGIDPQRKTELLSLISALPEDEWFVETAKSAINKLLGVDGSDGSEIDDDHIILHDDNVSDSDDTTSSLSTLESTESFASASMGELESPSDLTDSEN 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12809291 12823240 - ClCG01G009310.1 Cla01g00925 264514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00925 1046 MobiDBLite consensus disorder prediction 381 395 - -
Cla01g00925 1046 MobiDBLite consensus disorder prediction 1012 1039 - -
Cla01g00925 1046 SUPERFAMILY Cullin repeat-like 410 629 IPR016159 -
Cla01g00925 1046 MobiDBLite consensus disorder prediction 1004 1046 - -
Cla01g00925 1046 SUPERFAMILY Cullin repeat-like 138 303 IPR016159 -
Cla01g00925 1046 MobiDBLite consensus disorder prediction 376 395 - -
Cla01g00925 1046 PANTHER EXOCYST COMPLEX COMPONENT EXO84C 1 286 - -
Cla01g00925 1046 PANTHER EXOCYST COMPLEX COMPONENT EXO84C 336 1046 - -
Cla01g00925 1046 PANTHER EXOCYST COMPLEX COMPONENT 8 1 286 IPR033961 GO:0000145|GO:0006887
Cla01g00925 1046 PANTHER EXOCYST COMPLEX COMPONENT 8 336 1046 IPR033961 GO:0000145|GO:0006887
Cla01g00925 1046 Pfam Exocyst component 84 C-terminal 411 613 IPR032403 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00925 K19986 EXOC8, SEC84; exocyst complex component 8 - csv:101222251 1180.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00925 Cla-Chr1:12809291 Cla09g00137 Cla-Chr9:1413404 6.13E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g151 Blo01g00906 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00925 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009146 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00925 Cla_Chr01 FPKM 6.722821 8.460176 8.021033 7.085052 1.321726 2.200541 2.265765 19.213842 19.863623 20.00573