Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00928 ATGGCCGCAAAAGATGCAGAGCAAGTCTTGGACGTGCAGTCGGTTGTCGAAGCAGTAGTTGCAAACGAAGACGCCGATGTTCCTAGCTACGAAGTAGAAAGCCTCTGCATGCGTTGCGGCGAAAACGGGACAACAAGATTTTTATTAACTTTAATTCCGCACTTCAGAAAGATCTTGTTGTCAGCCTTTGAATGTCTACATTGTGGTGAGAGGAACAATGAAGTCCAGTTTGCTGGTGAGATCCAGCCACGAGGCTGTTGCTACTGTTTGGAGGTTCATGCAGGCGACCAGAAGATGCTCAATCGACAAGTGGTAAAATCTGAATCTGCCATTATTAAGATCCCAGAATTGGATTTTGAGATTCCAGCAGAGGCTCAACGTGGAACTCTATCAACTGTGGAAGGTATATTGGTACGAGCCGCAGATGAATTAGAAGCCCTTCAAGAGGAACGTAGGAAGGTGGATCCTCAGACTGCTGAAGCAATAGACCAGTTTCTCCTGAAACTGAAAGCTTGTGCCATGGGAGATTCATCATTCTCCTTCATCTTGGATGATCCAGCTGGAAACAGCTTCATTGAGAACCCATTTGCACCAGCTAAAGATCCATCATTAAGTATCAAGTTTTATGAGCGGACTCCAGAACAACAAGCATCGTTGGGTTATTACGTTGAACCATCACAACCAGCAGAAGCTGAGGATGGAGCATCAACAGGTGGAGTTGATGCTTGTAATCAAGTTAGAGGAGAGGCACATGGATCTGTAGGAGCAACGGCTGGCCATCGGGCAATAGCTCAAAGTAACAGTGCAGAGATTGCTGAGGCCTTGTTTCGTTACACTGCACCAGAAGAAGTGATGACTTTCCCATCAACATGTGGAGCTTGTGCAGTTAGGTGTGAGACTCGAATGTTTGTAACCAAAATTCCCTACTTCCAAGAAGTGATTGTCATGGCAACTACTTGTGATGCTTGTGGTTACCGTAGTTCTGAGCTGAAGCCTGGAGGGCGAATCCCTGAAAAAGGAAAGATAATTAGTCTTTGTGTGAAGGATGTTAGAGATCTCAGTCGAGATGTGATAAAGTCAGATACTGCAAGTGTAAAAGTCCCAGATCTTGACTTGGAGCTGACTAGTGGCACTCTTGGGGGAATTGTTACAACTGTCGAAGGTTTAATCACAAAGATAAGTGAAAGTCTTGAGAGAGTACATGGATTTACTTTTGGAGACAGTCTTGATGAAAATAGAAGAAACAAATGGTTGGACTTCAAAACAAGACTAACCAAGCTCTTGAGTTTGGAACAGCCTTGGACTCTCATCCTTGATGATGCACTAGCTAATTCGTTTATTGCACCAGTGACTGATGATATGAAAGATGACCATCAGTTAACATGCGAGGAATACGAGAGATCCTGGGAACAGAATGAGGAACTTGGTTTGAACGACATGGACACTTCGGCCGCTGATGCTGCATATAATTAA 1473 44.33 MAAKDAEQVLDVQSVVEAVVANEDADVPSYEVESLCMRCGENGTTRFLLTLIPHFRKILLSAFECLHCGERNNEVQFAGEIQPRGCCYCLEVHAGDQKMLNRQVVKSESAIIKIPELDFEIPAEAQRGTLSTVEGILVRAADELEALQEERRKVDPQTAEAIDQFLLKLKACAMGDSSFSFILDDPAGNSFIENPFAPAKDPSLSIKFYERTPEQQASLGYYVEPSQPAEAEDGASTGGVDACNQVRGEAHGSVGATAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACAVRCETRMFVTKIPYFQEVIVMATTCDACGYRSSELKPGGRIPEKGKIISLCVKDVRDLSRDVIKSDTASVKVPDLDLELTSGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDENRRNKWLDFKTRLTKLLSLEQPWTLILDDALANSFIAPVTDDMKDDHQLTCEEYERSWEQNEELGLNDMDTSAADAAYN 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12840615 12864439 - ClCG01G009340.2 Cla01g00928 264517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00928 490 PANTHER ZINC FINGER PROTEIN ZPR1 3 490 IPR040141 -
Cla01g00928 490 Coils Coil 130 150 - -
Cla01g00928 490 SMART zpr1 34 194 IPR004457 GO:0008270
Cla01g00928 490 SMART zpr1 289 449 IPR004457 GO:0008270
Cla01g00928 490 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 36 218 IPR004457 GO:0008270
Cla01g00928 490 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 290 481 IPR004457 GO:0008270
Cla01g00928 490 Gene3D ZPR1, A/B domain 335 477 IPR042451 -
Cla01g00928 490 Gene3D ZPR1, A/B domain 80 221 IPR042451 -
Cla01g00928 490 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 3 490 - -
Cla01g00928 490 Pfam ZPR1 zinc-finger domain 34 193 IPR004457 GO:0008270
Cla01g00928 490 Pfam ZPR1 zinc-finger domain 289 447 IPR004457 GO:0008270
Cla01g00928 490 Gene3D ZPR1, zinc finger domain 26 79 IPR042452 -
Cla01g00928 490 Gene3D ZPR1, zinc finger domain 279 334 IPR042452 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00927 Cla-Chr1:12838424 Cla01g00928 Cla-Chr1:12840615 6.34E-40 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00928 K06874 - csv:101208000 921.768