Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00931 ATGGCGCAGAAGTCTTTGATCTACGCTTTCGTCGCTCGTGGAACCGTGATTCTCGCTGAGTACACCGAATACAGTGGGAATTTCAATTCCATTGCTTTTCAATGCCTCCAGAAATTGCCCACTGCCAATAACAAATTCACCTACAATTGCGATGGCCACACCTTCAACTATCTCGTTGACAACGGTTACACATACTGTGTAGTTGCAACTGAATCAGCAGGAAGGCAAGTGCCTATTGCATTTTTGGAGCGTATTAAGGATGATTTTGTGTCGAAATATGGAGGGGGAAAGGCTTCCACGGCTCCTGCCAACAGTCTAAACAAGGAATTTGGGTCAAAATTGAAAGAACATATGCAGTACTGTGTTGATCATCCTGAAGAGGTTAGCAAGCTTGCAAAGGTGAAAGCTCAGGTTTCAGAAGTGAAAGGTGTTATGATGGAAAATATTGAAAAGATCACAGGCAAGAGCGGTCTGTTATCTGGTTCAATAGGAATTTTTGAGCAAGAACTGAAGGGTTCAAATGATCACACTTGTATTTGTTTTAAAACTCAAGGTGCCATTATCCAACTTCCAGGAACAGTTGATGTCTATCCTGATTCTGAAGTCAGAAGCTCTAAGGCAGTAGTTTTCCTGGAGAAGAAGATTAGGAATTTCTTGTGGAAGAGGGGTGATAGGAACTCAGGAGGTCGTAATCTTGACAATTGGAAGGTTCTTGATAGAGGAGAGAAGATAGAACTTCTAGTGGACAAGACAGAAAACCTTCACAACCAGGCACAAGACTTTAAGAGTAGTGGAACAAAAATTCGAAGGAAAATGTGGCTACAAAATATGAAGATCAAGTTGATCGTTTTGGGGATTTTGATAGCGTTGATCCTTATCATAGTCCTTTCAGTTTGCCGTGGGTTCAACTGTGGTCAAAAGTGA 924 41.67 MAQKSLIYAFVARGTVILAEYTEYSGNFNSIAFQCLQKLPTANNKFTYNCDGHTFNYLVDNGYTYCVVATESAGRQVPIAFLERIKDDFVSKYGGGKASTAPANSLNKEFGSKLKEHMQYCVDHPEEVSKLAKVKAQVSEVKGVMMENIEKITGKSGLLSGSIGIFEQELKGSNDHTCICFKTQGAIIQLPGTVDVYPDSEVRSSKAVVFLEKKIRNFLWKRGDRNSGGRNLDNWKVLDRGEKIELLVDKTENLHNQAQDFKSSGTKIRRKMWLQNMKIKLIVLGILIALILIIVLSVCRGFNCGQK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12902156 12913102 + ClCG01G009380.2 Cla01g00931 264520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00931 307 SUPERFAMILY SNARE fusion complex 236 277 - -
Cla01g00931 307 Gene3D Longin domain 1 123 - -
Cla01g00931 307 CDD Longin 7 121 IPR010908 -
Cla01g00931 307 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Cla01g00931 307 Gene3D - 231 299 - -
Cla01g00931 307 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 215 275 IPR042855 -
Cla01g00931 307 PANTHER SYNAPTOBREVIN, LONGIN-LIKE DOMAIN PROTEIN-RELATED 1 152 - -
Cla01g00931 307 PANTHER SNARE PROTEINS 236 255 - -
Cla01g00931 307 CDD R-SNARE 231 273 - -
Cla01g00931 307 Pfam Synaptobrevin 236 299 IPR042855 -
Cla01g00931 307 PANTHER SNARE PROTEINS 1 152 - -
Cla01g00931 307 SUPERFAMILY SNARE fusion complex 125 159 - -
Cla01g00931 307 PANTHER SYNAPTOBREVIN, LONGIN-LIKE DOMAIN PROTEIN-RELATED 236 255 - -
Cla01g00931 307 SMART Longin_2 31 113 IPR010908 -
Cla01g00931 307 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Cla01g00931 307 Gene3D - 124 160 - -
Cla01g00931 307 Pfam Regulated-SNARE-like domain 34 111 IPR010908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00931 Cla-Chr1:12902156 Cla06g00742 Cla-Chr6:9743535 4.61E-78 dispersed
Cla01g00931 Cla-Chr1:12902156 Cla05g00363 Cla-Chr5:3300210 9.77E-26 transposed
Cla01g00931 Cla-Chr1:12902156 Cla07g00178 Cla-Chr7:2004073 1.46E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00931 K08511 - csv:101221779 303.523