Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00950 ATGGGTTGTCTACCTTCGAGAGCGAGTGCTAAGTGGGAGGAGAAAAGTCGTGAAATGGTTGCTGGAATGTTTCAATTTCGCAGTCACCAATGTTCTTGTAGTCGTAGCTATACATTGCCTGCCGGTTTCATACAAAAGCAAACAATTCCATTCATTGTGCTAAAGAGATACAAGAAAGAAGAAGATAGGAAGAACAAACAACACCTCAAGAAAGCTGTCCCAGCAGCCATTTGCTTTCTTAATCAACCAGAGCGGCCAAAATTTGAAGGAGTGTTTAACAAACGGTTGATGGGTTTTGAGGATGAGAGAGAGAGAGAGAGAGAGGAAGTACTGTCGATGATGGCTAATCTTTTCATTCTCAAGTTCCCAAGTTTTAGTTCCAGTTTAAGGACTGTCTCTGCTTCAGCTTCATCAAATGGTGCTCATCCATTATCAGCAGGGAGTGGCAGCGGCAGTGGGCCAATGATCCTGGAGCTTCCTCTGGAGAAGATAAGGAGACCTCTAATGAGGACCAGAGCTAACGACCCCACTAAAGTCAAAGAACTAATGGACAGTATACAAGAAATTGGGCTTCAAGTACCCATTGATGTACTTGAAGTTGATGGAGTTTATTATGGTTTCTCTGGTTGTCATCGCTACGAAGCTCATCAACGCCTTGGGCTTCCTACAATCCGTTGCAAAATTCGTCGTGGAACCAAAGAAACCTTGAGGCACCACCTACGTTGA 726 44.08 MGCLPSRASAKWEEKSREMVAGMFQFRSHQCSCSRSYTLPAGFIQKQTIPFIVLKRYKKEEDRKNKQHLKKAVPAAICFLNQPERPKFEGVFNKRLMGFEDEREREREEVLSMMANLFILKFPSFSSSLRTVSASASSNGAHPLSAGSGSGSGPMILELPLEKIRRPLMRTRANDPTKVKELMDSIQEIGLQVPIDVLEVDGVYYGFSGCHRYEAHQRLGLPTIRCKIRRGTKETLRHHLR 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13430310 13434002 - ClCG01G009570.1 Cla01g00950 264539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00950 241 Gene3D - 154 241 - -
Cla01g00950 241 SMART ParB_7 157 236 IPR003115 -
Cla01g00950 241 SUPERFAMILY ParB/Sulfiredoxin 150 240 IPR036086 -
Cla01g00950 241 Pfam ParB/Sulfiredoxin domain 158 234 IPR003115 -
Cla01g00950 241 PANTHER UNCHARACTERIZED 122 241 IPR016692 GO:0032542
Cla01g00950 241 CDD Srx 156 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00950 K12260 SRX1; sulfiredoxin [EC:1.8.98.2] - csv:101217757 230.72
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g143 . . . . . . . . . Cmo18g00540 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00950 . Cec01g0975 Cco01g1022 Clacu01g0981 Cmu01g0934 Cre01g0863 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007624 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00950 Cla_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0