Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00951 ATGGCTGCTGGGACAGCTTTCTTGAGGCAATGTATAGCTACGACTACAAGAACATTGGTGACTGCGAAATTGAAACATTCCAGCAACCATTTCACGACTTTTCTCCTCCCACTTAGCACTCGCTCTCGAAGATTGACCATTCGTGCTGGTATCACAAACGATGAAGAAGTTGCTGCTAAAGCAGCTGCATCTGATGCAGACAGTGGAGCTCCAACCATATTTGACAAAATAATAGCCAAGGAAATTCCTTCGAACATTGTTTATGAGGATGATAAAGTCCTTGCATTCCGAGACATAAATCCACAGGCTCCTGTTCATGTATTAATCATTCCAAAGCTCAGAGATGGATTGACAGAGCTGGGAAAGGCTGAAGCAAGACATGGAGAGATACTGGGTCAGCTGCTGTATGCAGCCAAAATAGTGGCTGAAAAAGAGGGTATTGTTGAAGGATTTCGAGTAGTCATCAACAGTGGGGCAAGTGCTTGTCAATCTGTGTATCATCTTCACTTGCATGTCCTGGGAGGGAGACAGATGAAATGGCCTCCAGGTTGA 552 44.75 MAAGTAFLRQCIATTTRTLVTAKLKHSSNHFTTFLLPLSTRSRRLTIRAGITNDEEVAAKAAASDADSGAPTIFDKIIAKEIPSNIVYEDDKVLAFRDINPQAPVHVLIIPKLRDGLTELGKAEARHGEILGQLLYAAKIVAEKEGIVEGFRVVINSGASACQSVYHLHLHVLGGRQMKWPPG 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13433705 13438302 + ClCG01G009580.1 Cla01g00951 264540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00951 183 PANTHER HISTIDINE TRIAD HIT PROTEIN 43 183 IPR001310 -
Cla01g00951 183 CDD PKCI_related 71 175 - -
Cla01g00951 183 Gene3D - 53 183 IPR036265 -
Cla01g00951 183 PRINTS Histidine triad family signature 73 89 IPR001310 -
Cla01g00951 183 PRINTS Histidine triad family signature 94 112 IPR001310 -
Cla01g00951 183 PRINTS Histidine triad family signature 163 173 IPR001310 -
Cla01g00951 183 SUPERFAMILY HIT-like 71 182 IPR036265 -
Cla01g00951 183 ProSitePatterns HIT domain signature. 156 174 IPR019808 -
Cla01g00951 183 Pfam HIT domain 80 177 IPR011146 GO:0003824
Cla01g00951 183 PANTHER HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 1 43 183 - -
Cla01g00951 183 ProSiteProfiles HIT domain profile. 73 183 IPR011146 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00951 Cla-Chr1:13433705 Cla10g01610 Cla-Chr10:31538377 4.99E-24 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00951 - - csv:101217291 327.791