Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00951 ATGGCTGCTGGGACAGCTTTCTTGAGGCAATGTATAGCTACGACTACAAGAACATTGGTGACTGCGAAATTGAAACATTCCAGCAACCATTTCACGACTTTTCTCCTCCCACTTAGCACTCGCTCTCGAAGATTGACCATTCGTGCTGGTATCACAAACGATGAAGAAGTTGCTGCTAAAGCAGCTGCATCTGATGCAGACAGTGGAGCTCCAACCATATTTGACAAAATAATAGCCAAGGAAATTCCTTCGAACATTGTTTATGAGGATGATAAAGTCCTTGCATTCCGAGACATAAATCCACAGGCTCCTGTTCATGTATTAATCATTCCAAAGCTCAGAGATGGATTGACAGAGCTGGGAAAGGCTGAAGCAAGACATGGAGAGATACTGGGTCAGCTGCTGTATGCAGCCAAAATAGTGGCTGAAAAAGAGGGTATTGTTGAAGGATTTCGAGTAGTCATCAACAGTGGGGCAAGTGCTTGTCAATCTGTGTATCATCTTCACTTGCATGTCCTGGGAGGGAGACAGATGAAATGGCCTCCAGGTTGA 552 44.75 MAAGTAFLRQCIATTTRTLVTAKLKHSSNHFTTFLLPLSTRSRRLTIRAGITNDEEVAAKAAASDADSGAPTIFDKIIAKEIPSNIVYEDDKVLAFRDINPQAPVHVLIIPKLRDGLTELGKAEARHGEILGQLLYAAKIVAEKEGIVEGFRVVINSGASACQSVYHLHLHVLGGRQMKWPPG 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13433705 13438302 + ClCG01G009580.1 Cla01g00951 264540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00951 183 PANTHER HISTIDINE TRIAD HIT PROTEIN 43 183 IPR001310 -
Cla01g00951 183 CDD PKCI_related 71 175 - -
Cla01g00951 183 Gene3D - 53 183 IPR036265 -
Cla01g00951 183 PRINTS Histidine triad family signature 73 89 IPR001310 -
Cla01g00951 183 PRINTS Histidine triad family signature 94 112 IPR001310 -
Cla01g00951 183 PRINTS Histidine triad family signature 163 173 IPR001310 -
Cla01g00951 183 SUPERFAMILY HIT-like 71 182 IPR036265 -
Cla01g00951 183 ProSitePatterns HIT domain signature. 156 174 IPR019808 -
Cla01g00951 183 Pfam HIT domain 80 177 IPR011146 GO:0003824
Cla01g00951 183 PANTHER HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 1 43 183 - -
Cla01g00951 183 ProSiteProfiles HIT domain profile. 73 183 IPR011146 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00951 - - - csv:101217291 327.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00951 Cla-Chr1:13433705 Cla10g01610 Cla-Chr10:31538377 4.99E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g142 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00951 . Cec01g0976 Cco01g1023 Clacu01g0982 Cmu01g0935 Cre01g0864 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012591 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00951 Cla_Chr01 FPKM 10.426857 11.818933 16.762642 17.738564 10.391858 9.153975 8.755184 15.69117 17.120171 15.814351