Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00952 ATGGCGCGAAAATCTTCTCTCCTCAAGCGAACCCTAGCTTCTCTCTGCTTTATTCTGGCCCTATATGCCATTGTTAACACCTTCATCAGCTCCACAGCCACTCTCAAGCTCGACCGCTCCTTCCCCTTCAGCACTGCCAATTCCGTTATGGTCTCCGAAGAATTTGGTTCCCAAGACACTGATCTCCTCAACACCTCTGCGAAATTCGTCTCTCCGGTCAAGATTTACCTTTACGATGTGCCCACCAGGTTTACGTACGGTGTAATTGAGAACCACGGCATAGCGCGCGGAGGAAAATCCGTCCCTAAAGTCACGGACCTTAAGTATCCAGGCCATCAGCATATGGCCGAGTGGTATCTGTTCACGGATCTGCTTCGACCGGAGTCGGAGCGTATTGGGTCTGCTGTGGTTAGGGTTTTCGATCCGGAGGAAGCGGATTTGTATTATGTACCGTTCTTCTCGTCCTTAAGCTTGATCGTCAACCCTATCCGACCTGCAACGGGGTCGGATCAGCAGCAACGGAAGCTTGTGTACAGTGACGAGGAGACGCAGGATGCCTTCATGGAGTGGTTGGAGAAGCAGGAGTACTGGAAGCGGAACTATGGGCGGGATCACGTCATTGTAGCGCAGGACCCTAATGCATTGTACAGGGTGATTGATAGGGTTAAGAACAGTATCTTGCTCGTTTCGGATTTCGGCCGGTTGAGGGCTGACCAAGCCTCGCTAGTTAAGGACGTGATTGTACCATACTCCCATAGGATCAATACTTATAATGGTGACATCGGAGTTGAGAATCGCAAAACTTTATTGTTCTTCATGGGCAATCGATTCCGTAAAGAGGGAGGAAAGATACGTGATATGCTTTTCGATATTCTTGAGGAAGAACGGGATGTCATAATCAAACATGGAACACAATCACGAGAGAGCCGGCGTGCTGCTACACATGGGATGCATACATCTAAGTTCTGCTTGAATCCAGCTGGTGACACTCCCTCTGCGTGTCGACTTTTTGATTCTGTAGTAAGCTTATGTGTACCAGTGATTGTCAGCGATAGTATTGAGTTGCCTTTCGAAGATGTTATAGATTACTCCAAGATTGCGGTGTTTTTTGATTCGGTTTCTGCTGTGAAACCTGGATTTCTGATTTCAAAGCTGAGGAGAATATCCAAAGAGAGGATTCTGGAGTATCAGAGAGAAATGAAAAAGATAAAGAGATACTTTGAGTATACAGACTCAAATGGCACAGTGAACGAAATATGGCGCCAAGTCTCACAGAAGTTACCTCTAATTAAGCTAATGATTAATCGCGGAAGGAGGCTCATTCATGGAGATGGTGATGAACCAGACTGCTCTTGTCTCTGTTCAAACCAAACTGGCATCAGGGCTAGACTATAA 1395 46.88 MARKSSLLKRTLASLCFILALYAIVNTFISSTATLKLDRSFPFSTANSVMVSEEFGSQDTDLLNTSAKFVSPVKIYLYDVPTRFTYGVIENHGIARGGKSVPKVTDLKYPGHQHMAEWYLFTDLLRPESERIGSAVVRVFDPEEADLYYVPFFSSLSLIVNPIRPATGSDQQQRKLVYSDEETQDAFMEWLEKQEYWKRNYGRDHVIVAQDPNALYRVIDRVKNSILLVSDFGRLRADQASLVKDVIVPYSHRINTYNGDIGVENRKTLLFFMGNRFRKEGGKIRDMLFDILEEERDVIIKHGTQSRESRRAATHGMHTSKFCLNPAGDTPSACRLFDSVVSLCVPVIVSDSIELPFEDVIDYSKIAVFFDSVSAVKPGFLISKLRRISKERILEYQREMKKIKRYFEYTDSNGTVNEIWRQVSQKLPLIKLMINRGRRLIHGDGDEPDCSCLCSNQTGIRARL 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13442589 13446683 - ClCG01G009590.2 Cla01g00952 264541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00952 464 Pfam Exostosin family 71 384 IPR040911 -
Cla01g00952 464 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 1 442 IPR004263 GO:0006486|GO:0016757
Cla01g00952 464 PANTHER ARABINOSYLTRANSFERASE ARAD1-RELATED 1 442 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00952 Cla-Chr1:13442589 Cla08g01011 Cla-Chr8:22836201 2.52E-90 dispersed
Cla01g00952 Cla-Chr1:13442589 Cla07g01137 Cla-Chr7:28251948 4.47E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00952 K23200 - csv:101216577 871.307