Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00957 ATGGCTCTGCGGGACTTCCTCTTCCTGTTTTTCTTCTTGATCTTTGATTGTATTCCATTTACTCGTGCTCTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGGTAATGGAGGCGATCCATGTGTAGAGTCATGGAAAGGGGTGACTTGTGAAGGATCTGCTGTTGTTTCCATTGAGATTTCTGGGTTAGGGCTGAATGGAACGATGGGTTATGCGCTCTCAAGTTTTTTGTCATTGGAAAAGCTTGATATGAGCGACAACAATATTCATGACACGATTCCTTACCAATTGCCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAGCTTAAGTGGTAATCTTCCTTATTCCTTTTCCACCATGGCTTCTCTCAATTATTTGAATATGAGCCACAATTTGCTATCTCAGGCGATAGGAGATGTTTTCACCAATCTTACTACCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTATCCAATGTTTCTTCCTTGTTTTTGCAGAACAACCAATTGACTGGCTCTCTCAATATTCTTATCGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTTGAAAATTTCATGTATGATGGAAATTCATTTGACCATAGTCCTGCACCTCCTCCACCACCTTTTACTCCACCTCCTCCTGGTAGATCTCGTAGTAGCCCCAGACATCCTGGGTCTAGCGGTGGCACCCATACTGCCCCAAGTTCTGATGGGAGTTCATCCCACTCAAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATAATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTCTGCATCCAGAAGAGAAAACGAAAGAACATTGGTCTTCGAGCTTCCAGTGGAAGGCTGTCTGTTGGCACCAGTGTGAATGCTGAGGTGCAAGAGCATCGGGTGAAAAGTGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGGTTGCCGGCGAAAAATGGATCGGTGAAAAGAATAAAGTCCCCTATTACTGCTACTTCATACACCGTTGCTTCCCTTCAAACTGCAACAAATAGTTTTAGCCAAGAATGCATAGTTGGTGAAGGTTCTCTTGGTCGGGTTTACAAAGCTGACTTTCCTAACGGGAAGATAATGGCGATTAAGAAAATCGATAATGCAGCGCTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCAGTTTCAAACATGTCAAGGTTGAGGCATACAAACATTGTCACACTAAATGGTTATTGTGCAGAGCACGGCCAGCGTCTTCTAGTTTATGAGTTCATTGGAAATGGAAGTTTACATGACATGCTGCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAATGCACGTGTCCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGATCTCAACCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGATTTCTACTCGGATGGTTGGTTCATTTGGCTATAGTGCTCCGGAATTTGCCTTGTCAGGAATATACACTGTCAAAAGTGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCTAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTACATGATATCGATGCCTTAGCAAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCGAAATCTCTGTCCCGCTTTGCTGACATCATTGCTCTCTGTGTTCAGCCTGAGCCTGAATTTCGACCTCCCATGTCCGAAGTAGTACAAGCACTGGTGCGTTTAGTGCAAAGAGCGAGTGTGGTAAAAAGGCATTCGAGCGACGAGACAGGTTTCAGTTACAGAACGCCTGAGCACGATGCAGTTGAGTTGCCATTTTGA 2136 44.19 MALRDFLFLFFFLIFDCIPFTRALTDASDVQALQVIYTSLNSPPQLTGWIGNGGDPCVESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLEKLDMSDNNIHDTIPYQLPPNLTSLNMAKNSLSGNLPYSFSTMASLNYLNMSHNLLSQAIGDVFTNLTTLGTLDLSFNNFTGDLPKSLGTLSNVSSLFLQNNQLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVENFMYDGNSFDHSPAPPPPPFTPPPPGRSRSSPRHPGSSGGTHTAPSSDGSSSHSNKGLPVLAIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSVGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLPAKNGSVKRIKSPITATSYTVASLQTATNSFSQECIVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTRMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDETGFSYRTPEHDAVELPF 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13509629 13515377 - ClCG01G009630.1 Cla01g00957 264546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00957 711 MobiDBLite consensus disorder prediction 264 286 - -
Cla01g00957 711 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cla01g00957 711 Gene3D Ribonuclease Inhibitor 25 252 IPR032675 -
Cla01g00957 711 Gene3D Phosphorylase Kinase; domain 1 366 480 - -
Cla01g00957 711 Gene3D Transferase(Phosphotransferase) domain 1 481 704 - -
Cla01g00957 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 702 - -
Cla01g00957 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00957 711 SUPERFAMILY L domain-like 25 232 - -
Cla01g00957 711 CDD STKc_IRAK 409 680 - -
Cla01g00957 711 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8-LIKE ISOFORM X1 10 702 - -
Cla01g00957 711 SUPERFAMILY Protein kinase-like (PK-like) 383 677 IPR011009 -
Cla01g00957 711 MobiDBLite consensus disorder prediction 244 263 - -
Cla01g00957 711 MobiDBLite consensus disorder prediction 240 286 - -
Cla01g00957 711 Pfam Protein kinase domain 405 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00957 - - - csv:101216091 1244.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00957 Cla-Chr1:13509629 Cla08g00508 Cla-Chr8:15265579 0 dispersed
Cla10g01682 Cla-Chr10:32547405 Cla01g00957 Cla-Chr1:13509629 1.57E-83 dispersed
Cla01g00957 Cla-Chr1:13509629 Cla02g00126 Cla-Chr2:1403708 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla02g00126 . 34 718 Strubbelig Receptor Gene Family AT4G03390 60.0 7.6e-196 681.0
Cla01g02225 . 59 605 Strubbelig Receptor Gene Family AT4G03390 50.3 3.3e-130 463.0
Cla09g00135 . 540 879 Strubbelig Receptor Gene Family AT4G03390 51.2 2.6e-87 320.5
Cla10g01655 . 1 712 Strubbelig Receptor Gene Family AT5G06820 51.1 8.0e-171 597.8
Cla08g00508 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.9e-193 672.9
Cla01g02225 . 307 605 Strubbelig Receptor Gene Family AT1G78980 52.7 4.2e-84 309.7
Cla08g00508 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.8e-148 521.5
Cla09g00135 . 541 877 Strubbelig Receptor Gene Family AT3G13065 51.3 1.6e-91 334.3
Cla02g00126 . 430 708 Strubbelig Receptor Gene Family AT3G13065 50.4 5.9e-75 279.3
Cla01g00957 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.2 1.4e-84 311.2
Cla10g01655 . 1 712 Strubbelig Receptor Gene Family AT5G06820 51.1 8.0e-171 597.8
Cla02g00126 . 34 718 Strubbelig Receptor Gene Family AT4G03390 60.0 7.6e-196 681.0
Cla01g02225 . 59 605 Strubbelig Receptor Gene Family AT4G03390 50.3 3.3e-130 463.0
Cla09g00135 . 540 879 Strubbelig Receptor Gene Family AT4G03390 51.2 2.6e-87 320.5
Cla08g00508 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.8e-148 521.5
Cla09g00135 . 541 877 Strubbelig Receptor Gene Family AT3G13065 51.3 1.6e-91 334.3
Cla02g00126 . 430 708 Strubbelig Receptor Gene Family AT3G13065 50.4 5.9e-75 279.3
Cla08g00508 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.9e-193 672.9
Cla01g02225 . 307 605 Strubbelig Receptor Gene Family AT1G78980 52.7 4.2e-84 309.7
Cla07g01353 . 77 817 Strubbelig Receptor Gene Family AT1G53730 50.4 2.3e-178 622.9
Cla09g00135 . 49 904 Strubbelig Receptor Gene Family AT1G53730 50.5 2.1e-171 599.7
Cla08g00508 . 20 693 Strubbelig Receptor Gene Family AT1G53730 50.4 1.3e-154 543.9
Cla01g00957 . 7 689 Strubbelig Receptor Gene Family AT1G53730 50.9 4.7e-147 518.8
Cla01g02225 . 312 605 Strubbelig Receptor Gene Family AT3G14350 51.2 2.4e-76 283.9
Cla01g00957 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 4.4e-177 618.2
Cla09g00135 . 538 896 Strubbelig Receptor Gene Family AT4G22130 57.4 2.2e-112 403.3
Cla07g01353 . 509 824 Strubbelig Receptor Gene Family AT4G22130 60.1 1.8e-109 393.7
Cla02g00126 . 427 720 Strubbelig Receptor Gene Family AT4G22130 60.7 1.7e-104 377.1
Cla08g00508 . 360 707 Strubbelig Receptor Gene Family AT4G22130 52.4 1.3e-99 360.9
Cla01g02225 . 317 605 Strubbelig Receptor Gene Family AT4G22130 59.8 4.8e-99 359.0
Cla10g01655 . 374 696 Strubbelig Receptor Gene Family AT4G22130 51.7 9.7e-92 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004508 2 2 2 1 0 0 2 0 0 1 1 0 2 1 0 2 0 0 2 0 1 0 0 0 0 1 1 1 0 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80254 PF00069 Pkinase 6.10E-44 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00957 Cla_Chr01 FPKM 9.991171 9.498879 19.639261 22.185244 16.250309 14.577253 15.746938 13.520935 12.099244 14.603164