Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00962 ATGGGGTTTTCTTCGACAATAATAATTTTAACACTTGTAATTATTCTATTATTTTATGGAATTAGTTTTGATCATCTTGTTTCTTGTTTTGCAGAAAAGAGAGAAATTTTCTTGGTTGTAATGGAAGATAATGAGTTAAAAAACAACAAAGAAATGATAATGGAGGATTCACACAATAAGCTTCTAGAAAACACTATAAAAAGCTACACAAAGCTCCATAGCTTCAAGCAAATTTTCAATGGCTTTGCAGTTCACACAACCCCATCACAAGCCTCAAAGCTTAGAGAAGTTGATGGAGTGAAATTGGTTGAGTTAGATAGAGGAGTGAGGAAAATGACTACTTATACCCCTGAGTTTCTAGGACTAGTGCCCTCCAATAATCATAAATATTATTATAATTATAGTGTTATTGGTGGTGGTGGTGAAGGCATTTTGATTGGGTTTGTGGACTCTGGTATTTACCCAACACACCCAAGTTTTAGTTTTGGTAATTTTGATCATCAAGAAGAGGAGTTGTTTTGTGGGGTTTGTGAAGAAGGTCCTTTTTTCCCAAAAGCTTCTTGCAATGGGAAGATAGTGAGTGCAAGGTTTTTCTCTAATGGGGCTCAGGCTATTGCAAAGCTTAACTCTTCCCTTGATTTTCTCTCTCCATTTGATGCTGAAGGCCATGGAAGCCATGTGGCATCCATAGCTGCTGGGAATGCAGGTGTTCCAGTTATTGTAAATGGTTTCTTCTATGGATTGGCCAGTGGAATCGCGCCACGTGCACGAATTGCTGTTTACAAGGCCGTGTATCCAACCGCAGTGGTTGATGGGGTTGATATATTGGCATTATCAGTTGGACCAAATGAACCGCCCGAGGTAGGATTTACCTTCCTAAGCATATATGACATTGCCATATTATCTGCTACAAGAGCTGGAATCCTTGTTGTTCAAGCAGCCGGAAATAATGGCCCTGCCCGGGCAACCGTCGTCTCTTACAGCCCTTGGGCTATTGGCGTTGCAGCCTCCGGCACCGACAGAGTTTATTTGGCCTCACTTCTTCTCGGCAATGGCCAAAAAATTGCAGGAGTAGGACTGTCTGGACCTACCTTAGGGAGGGAGTTTTTCCTACACAAGTTAGTATTGGCTGAGGATGCAAGGAGGTCAAATGAAACACATCCCAACGTACCAAATTACAATGAAGAGTGCCAAAATCCCGAAGCTTTTGACCCAAATATTGTTGAAAACAGCATAGTCCTCTGCTCTTTCTCACAAGGATTCCTCAATGGAACCTCCTCTCTTAAAGCCATCATTCGCACTGCAACAACACTCAGATTCATGGGTTTTGTTCTCCTTGCAAATCCACACTATGGTGATTTCATTGCAGAGCCCATCCCTTTCAAAGTTCCAGGCATACTCGTCCCGACCGTATCAGATACTAAGGTGATACTGAAATACTATGAAGAAAATACATGGAAGGATAGAAGGGGAATTGTTAGTGAATTTAAAGGGAAAGCAGGCATTGGAGAAGGAAGAGTTGCTTCATTTGGAAGGCAAGCAGCCAGTGTTAGCAGATTTTCATCAAGAGGACCAGATTACATCAACATAAATAGGACTATAGCTGATATACTAAAGCCTGATATTCTTGCACCAGGTCACCAAATCTGGGCTGCTTGGAGCCCTCTTAGTGGCTCACAGCCACTTTTAAAGGGATACCATTTTGCACTGTTATCTGGAACAAGTATGGCAGCACCTCATATTGTGGGAATAGCAGCACTTATCAAGCAAAAGTATCCTTCTTGGACTCCTTCCATGATAGCTTCTGCAATGTCCACAACTGCTACAAAGTATGATATGAATGGAGACCTTATTCAGGCAGAGGGATTCAACCTTCATAGTTTATATCCTTCTACTCCCTTCGACTTTGGCGCTGGCCTCGTTTCTCCGACCAACGCTTTGGACCCGGGACTCGTCTTCCCTTCAGAATATGAAGACTATATAAACTTCTTGTGCTCTTTACCTGGGGTTGATCCTACTGTCATCAGAAGTGCCACCGGAGGACAGTGCAATGCCTCTATCCCACAGCCACACCCTGCAGATCTGAACCTTCCTTCAGTCACCATATCATCATTGGTTGGGAATCAGGTAGTGCAGAGAAGAGTGAAGAATGTAGGAGGCAAAGTGGAGACTTATGTGTGGTCAGTGATACCGCCAAATGGGACAACAGTCAACATCAATCCGCCATGGTTCACCGTAGCGCCCGAAGAAGTCCAAAACTTGGAAATACAAATCAATGTCACACACAAAATGGATCATTTTACCTTCGGGGAGATTATTTTGACAGGAAGTTTAAACCATATTGCAAGAATCCCTTTGTCAGTTTTGGCTGTTTCTGCATCCTGA 2385 42.68 MGFSSTIIILTLVIILLFYGISFDHLVSCFAEKREIFLVVMEDNELKNNKEMIMEDSHNKLLENTIKSYTKLHSFKQIFNGFAVHTTPSQASKLREVDGVKLVELDRGVRKMTTYTPEFLGLVPSNNHKYYYNYSVIGGGGEGILIGFVDSGIYPTHPSFSFGNFDHQEEELFCGVCEEGPFFPKASCNGKIVSARFFSNGAQAIAKLNSSLDFLSPFDAEGHGSHVASIAAGNAGVPVIVNGFFYGLASGIAPRARIAVYKAVYPTAVVDGVDILALSVGPNEPPEVGFTFLSIYDIAILSATRAGILVVQAAGNNGPARATVVSYSPWAIGVAASGTDRVYLASLLLGNGQKIAGVGLSGPTLGREFFLHKLVLAEDARRSNETHPNVPNYNEECQNPEAFDPNIVENSIVLCSFSQGFLNGTSSLKAIIRTATTLRFMGFVLLANPHYGDFIAEPIPFKVPGILVPTVSDTKVILKYYEENTWKDRRGIVSEFKGKAGIGEGRVASFGRQAASVSRFSSRGPDYININRTIADILKPDILAPGHQIWAAWSPLSGSQPLLKGYHFALLSGTSMAAPHIVGIAALIKQKYPSWTPSMIASAMSTTATKYDMNGDLIQAEGFNLHSLYPSTPFDFGAGLVSPTNALDPGLVFPSEYEDYINFLCSLPGVDPTVIRSATGGQCNASIPQPHPADLNLPSVTISSLVGNQVVQRRVKNVGGKVETYVWSVIPPNGTTVNINPPWFTVAPEEVQNLEIQINVTHKMDHFTFGEIILTGSLNHIARIPLSVLAVSAS 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13761077 13772902 - ClCG01G009680.1 Cla01g00962 264551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00962 794 Gene3D Peptidase S8/S53 domain 143 660 IPR036852 GO:0004252|GO:0006508
Cla01g00962 794 Pfam Peptidase inhibitor I9 37 110 IPR010259 -
Cla01g00962 794 ProSitePatterns Serine proteases, subtilase family, histidine active site. 223 233 IPR022398 -
Cla01g00962 794 Gene3D - 340 510 - -
Cla01g00962 794 Pfam Subtilase family 141 612 IPR000209 GO:0006508|GO:0008236
Cla01g00962 794 ProSitePatterns Serine proteases, subtilase family, serine active site. 573 583 IPR023828 -
Cla01g00962 794 PANTHER SUBTILISIN-LIKE PROTEASE SBT2.6 43 789 - -
Cla01g00962 794 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 146 157 IPR023827 -
Cla01g00962 794 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 43 789 IPR045051 -
Cla01g00962 794 CDD PA_subtilisin_like 346 485 - -
Cla01g00962 794 Pfam Fibronectin type-III domain 694 788 IPR041469 -
Cla01g00962 794 SUPERFAMILY Subtilisin-like 112 651 IPR036852 GO:0004252|GO:0006508
Cla01g00962 794 PRINTS Subtilisin serine protease family (S8) signature 141 160 IPR015500 -
Cla01g00962 794 PRINTS Subtilisin serine protease family (S8) signature 219 232 IPR015500 -
Cla01g00962 794 PRINTS Subtilisin serine protease family (S8) signature 572 588 IPR015500 -
Cla01g00962 794 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 26 110 IPR037045 -
Cla01g00962 794 Gene3D - 664 791 - -
Cla01g00962 794 ProSiteProfiles Serine proteases, subtilase domain profile. 117 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00962 Cla-Chr1:13761077 Cla01g02485 Cla-Chr1:38499272 0 dispersed
Cla01g00962 Cla-Chr1:13761077 Cla09g00096 Cla-Chr9:943443 3.58E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00962 - - csv:101204623 1306.97