Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00989 ATGGATAATAGGAAGATGGGAAAAAGGTTTGAGGGGAAGGTCGCCATTGTTACTGCTTCAACTCAAGGTATCGGCTTCCAAATTGCTCAGCGTCTCGCCTTGGAAGGTGCCTCCGTCGTTATTTCTTCCCGTAGACAGAAAAACGTTGATGAGGCAATTGAAAAACTCAAAGCTCAAGGACTTGAAGTGTTAGGGATTGTTTGTCATGTATCAAATGCACAGCAAAGGAAGAATCTGGTGGAAAAGACTATCCAGGTGAGAAAATATGGAAAAATAGACGTGGTTGTATCGAATGCAGCTGTCAATCCATCAGTCGAATCCATCTTGCGAACTCAAGAATCTGTCCTTGACAAGTTGTGGGACATAAATGTTAAAGCTTCGGTCCTCCTTTTGCAGGAAGTAGCTCCTCACTTGCAAAAAGGCTCTTCAGTTGTTCTTATTTCCTCCATTGAAGGATTCCAGCCTTCTGCCTTATTGGCCATGTATGGGGTGACAAAAACAGCCCTTCTTGGACTGACAAAGGCTCTTGCTGCAGAGATGGCCCCTGACACTCGTGTAAACTGTGTCGCTCCTGGTTTCGTGCCAACACACTTTGCTGATTTCCTTGTGTCTAATGAAGCCGTTAAAAAGGGAGTTGAGTCAAAGACTTTACTCAACCGGCTTGGTACGACTGAAGACATGGCTGCTGCCACTGCCTTTCTGGCATCGGATGATGCTTCGTATATTACCGGCGAAACTCTGGTTGTAGCTGGGGGGATGCCTTCCAGACTCTAG 774 45.99 MDNRKMGKRFEGKVAIVTASTQGIGFQIAQRLALEGASVVISSRRQKNVDEAIEKLKAQGLEVLGIVCHVSNAQQRKNLVEKTIQVRKYGKIDVVVSNAAVNPSVESILRTQESVLDKLWDINVKASVLLLQEVAPHLQKGSSVVLISSIEGFQPSALLAMYGVTKTALLGLTKALAAEMAPDTRVNCVAPGFVPTHFADFLVSNEAVKKGVESKTLLNRLGTTEDMAAATAFLASDDASYITGETLVVAGGMPSRL 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14465063 14468814 + ClCG01G009940.2 Cla01g00989 264578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00989 257 PANTHER DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4 5 257 - -
Cla01g00989 257 Gene3D - 2 255 - -
Cla01g00989 257 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 149 177 IPR020904 GO:0016491
Cla01g00989 257 PANTHER TROPINONE REDUCTASE-LIKE 3 5 257 - -
Cla01g00989 257 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 IPR002347 -
Cla01g00989 257 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 IPR002347 -
Cla01g00989 257 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 IPR002347 -
Cla01g00989 257 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 253 IPR036291 -
Cla01g00989 257 PRINTS Glucose/ribitol dehydrogenase family signature 136 152 IPR002347 -
Cla01g00989 257 PRINTS Glucose/ribitol dehydrogenase family signature 217 237 IPR002347 -
Cla01g00989 257 PRINTS Glucose/ribitol dehydrogenase family signature 14 31 IPR002347 -
Cla01g00989 257 PRINTS Glucose/ribitol dehydrogenase family signature 90 101 IPR002347 -
Cla01g00989 257 PRINTS Glucose/ribitol dehydrogenase family signature 182 199 IPR002347 -
Cla01g00989 257 PRINTS Glucose/ribitol dehydrogenase family signature 162 181 IPR002347 -
Cla01g00989 257 Pfam Enoyl-(Acyl carrier protein) reductase 22 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00989 Cla-Chr1:14465063 Cla10g02032 Cla-Chr10:36070154 9.07E-35 dispersed
Cla01g00989 Cla-Chr1:14465063 Cla07g00329 Cla-Chr7:3834085 2.71E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00989 K11147 - csv:101214017 437.187