Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01019 ATGACGAGAAAGAAGGTGAAACTTGCATACATCACAAATGACGCAGCAAGGAAAGCTACATTCAAGAAAAGGAAGAAAGGATTACTCAAGAAGCTCACCGAGCTTACCACTCTGTGCGGGATTGAGGCATGTGCCATAATCTTTAGCCCCTTTGATTCCCAACTTGACCTCTGGCCTTCTACCTTGGGGTTCCAGAGGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAAGGCAAGAAGATGGTCAACCAAGAGACGTTCCTCCGCGACCGGATCGCCAAGGCTGCCGACCAACTCAAGAAGTTGCAGAGGGAGAATCGCGAGAAGGAGATTGCTCGACTCATGTTTCAGAGCCTCGTAGTAGGAGCTACGCCACCGCCCGATCTCAATGTCATTGATTTGAACGATCTTGGGTGGCTTGTTGATCAAACAATAGTTGATATTAATAAAAGGATGGGGTTGCTTACCGCGAAGCAACCACCGCGTGTAGAGGCGGTGGAGCCGTCGTGGTTCATGGAGATGGTGAGTCAAGAAGTTGATGATGATGATCAAATGAGATTCAACATTGGGGATGACGTGATTCAACTTCCAAGTTTTGGGGAGAATGATAACCGTGGTGCTTTTTGGTCAAATAATGCCTTTTTCCCTTGA 657 47.49 MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPSTLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQSLVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLTAKQPPRVEAVEPSWFMEMVSQEVDDDDQMRFNIGDDVIQLPSFGENDNRGAFWSNNAFFP 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15608734 15609390 + ClCG01G010290.1 Cla01g01019 264608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01019 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla01g01019 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla01g01019 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla01g01019 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Cla01g01019 218 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cla01g01019 218 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cla01g01019 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla01g01019 218 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cla01g01019 218 Coils Coil 87 114 - -
Cla01g01019 218 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 172 - -
Cla01g01019 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 - -
Cla01g01019 218 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01019 Cla-Chr1:15608734 Cla03g01710 Cla-Chr3:33072835 4.66E-82 dispersed
Cla01g01019 Cla-Chr1:15608734 Cla10g00921 Cla-Chr10:21905135 1.23E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60405 PF00319 SRF-TF 4.50E-17 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01019 - - csv:101219796 327.405