Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01019 ATGACGAGAAAGAAGGTGAAACTTGCATACATCACAAATGACGCAGCAAGGAAAGCTACATTCAAGAAAAGGAAGAAAGGATTACTCAAGAAGCTCACCGAGCTTACCACTCTGTGCGGGATTGAGGCATGTGCCATAATCTTTAGCCCCTTTGATTCCCAACTTGACCTCTGGCCTTCTACCTTGGGGTTCCAGAGGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAAGGCAAGAAGATGGTCAACCAAGAGACGTTCCTCCGCGACCGGATCGCCAAGGCTGCCGACCAACTCAAGAAGTTGCAGAGGGAGAATCGCGAGAAGGAGATTGCTCGACTCATGTTTCAGAGCCTCGTAGTAGGAGCTACGCCACCGCCCGATCTCAATGTCATTGATTTGAACGATCTTGGGTGGCTTGTTGATCAAACAATAGTTGATATTAATAAAAGGATGGGGTTGCTTACCGCGAAGCAACCACCGCGTGTAGAGGCGGTGGAGCCGTCGTGGTTCATGGAGATGGTGAGTCAAGAAGTTGATGATGATGATCAAATGAGATTCAACATTGGGGATGACGTGATTCAACTTCCAAGTTTTGGGGAGAATGATAACCGTGGTGCTTTTTGGTCAAATAATGCCTTTTTCCCTTGA 657 47.49 MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPSTLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQSLVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLTAKQPPRVEAVEPSWFMEMVSQEVDDDDQMRFNIGDDVIQLPSFGENDNRGAFWSNNAFFP 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15608734 15609390 + ClCG01G010290.1 Cla01g01019 264608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01019 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla01g01019 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla01g01019 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla01g01019 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Cla01g01019 218 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cla01g01019 218 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cla01g01019 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla01g01019 218 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cla01g01019 218 Coils Coil 87 114 - -
Cla01g01019 218 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 172 - -
Cla01g01019 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 - -
Cla01g01019 218 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01019 - - - csv:101219796 327.405
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01019 Cla-Chr1:15608734 Cla03g01710 Cla-Chr3:33072835 4.66E-82 dispersed
Cla01g01019 Cla-Chr1:15608734 Cla10g00921 Cla-Chr10:21905135 1.23E-10 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00956 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.7e-50 196.8
Cla07g00897 . 2 175 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-52 203.4
Cla03g01710 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 7.1e-55 211.5
Cla01g01019 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cla10g00956 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.7e-50 196.8
Cla07g00897 . 2 175 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-52 203.4
Cla03g01710 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 7.1e-55 211.5
Cla01g01019 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cla10g00956 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.7e-50 196.8
Cla03g01710 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 7.1e-55 211.5
Cla01g01019 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cla07g00897 . 2 175 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-52 203.4
Cla10g00956 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.7e-50 196.8
Cla03g01710 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 7.1e-55 211.5
Cla01g01019 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cla07g00897 . 2 175 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-52 203.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60405 PF00319 SRF-TF 4.50E-17 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01019 Cla_Chr01 FPKM 29.267027 30.925737 27.845694 27.653879 31.687454 31.318619 28.86389 10.854823 9.806266 10.22073