Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01022 ATGGCCATCTCCATTGCCTTCTCGACGAACACCCACTTCCCATTTTCTACAATTTGCAGATCAATTTCCTCTCTCAGTCCATCCGTCGATGTTCTTTTTAACGCCAGGAGAGATTGCAATCGTGGGTTTCCTCTAATTAGAACATTGGACACCAAATTGGCAAAAACCAGGGCTGCATTGTCTGAAAATTCTTACCGCAAGCAGTACTCAAAAGTGGGTGCCAAATCTATTGGACCCATTCCACCTGCCCAGCTAATTCAAGTCGTTGAGAATGCTGCCAAGACAGGAGCCGAGGTGGTGATGGATGCTGTTAATAAGCCTCGGAATATTGAATATAAAGGATTGGCGGACTTAGTAACGGAAACAGATAAAATGAGTGAGGCTGCTATTCTGGAAGTCGTTAGAAAGAACTTTAGAGATCACCTCATCCTTGGAGAAGAGGGAGGAGTTATAGGGGATTCATCATCTGATTATCTTTGGTGCATTGATCCTTTAGATGGAACAACAAATTTTGCACATGGCTATCCTTCCTTTGCAGTATCTGTCGGAGTTTTATTTCGGGGAAATCCTGCTGCTGCAGCTGTGCTAAAAAAATGTGTCCTATGCAACTCTAACAATGAGCTGGTGCAGAGAGTGGGTCGAAACTCCCACGGAACAAGCAAGAATAAAGCAAGCACGTTGACATGCATCAAGCAAGTAGAGTTTGTTGGGGGTCCTATGTGCTGGAACACTCGCATATTTACTGCAACTGCTGGTGGGGGAGCATTCTGTAATGGCCAAAAGATTAATGTGAGTCAAACTAGCCAGGTGGAACGATCTCTTCTAGTTACAGGATTTGGATACGAACATGATGATCCATGGGCTACAAATATGGATTTATTTAAAGAATTCACAGATGTCAGCAGGGGAGTAAGAAGGCTCGGTGCAGCAGCAGTCGACATGAGCCATGTAGCTCTAGGAATTGTAGAAGCATATTGGGAGTATCGCCTGAAGCCATGGGATATGGCTGCAGGTGTTTTGATAGTTGAAGAAGCAGGTGGAGCAGTGACTCGCATGGATGGTGGAAAGTTCAGTGTCTTTGATAGATCTGTTTTGGTTTCTAATGGTGTTGTACATGACAAGCTTTTGGAGAAAATTGGTTGTGCAACCGAAAAACTAAAAAGCAAAGGAATTGATTTCTCATTGTGGTATAAACCAGAAAACTACCAGACAGATCTTTGA 1221 43.57 MAISIAFSTNTHFPFSTICRSISSLSPSVDVLFNARRDCNRGFPLIRTLDTKLAKTRAALSENSYRKQYSKVGAKSIGPIPPAQLIQVVENAAKTGAEVVMDAVNKPRNIEYKGLADLVTETDKMSEAAILEVVRKNFRDHLILGEEGGVIGDSSSDYLWCIDPLDGTTNFAHGYPSFAVSVGVLFRGNPAAAAVLKKCVLCNSNNELVQRVGRNSHGTSKNKASTLTCIKQVEFVGGPMCWNTRIFTATAGGGAFCNGQKINVSQTSQVERSLLVTGFGYEHDDPWATNMDLFKEFTDVSRGVRRLGAAAVDMSHVALGIVEAYWEYRLKPWDMAAGVLIVEEAGGAVTRMDGGKFSVFDRSVLVSNGVVHDKLLEKIGCATEKLKSKGIDFSLWYKPENYQTDL 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15649121 15657403 - ClCG01G010320.1 Cla01g01022 264611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01022 406 Gene3D - 263 386 - -
Cla01g01022 406 CDD IMPase 85 368 IPR033942 GO:0008934|GO:0046855
Cla01g01022 406 ProSitePatterns Inositol monophosphatase family signature 1. 160 173 IPR020583 -
Cla01g01022 406 ProSitePatterns Inositol monophosphatase family signature 2. 333 347 IPR020550 GO:0046854
Cla01g01022 406 PRINTS Inositol monophosphatase superfamily signature 299 320 IPR000760 GO:0046855
Cla01g01022 406 PRINTS Inositol monophosphatase superfamily signature 330 354 IPR000760 GO:0046855
Cla01g01022 406 PRINTS Inositol monophosphatase superfamily signature 117 137 IPR000760 GO:0046855
Cla01g01022 406 PRINTS Inositol monophosphatase superfamily signature 160 176 IPR000760 GO:0046855
Cla01g01022 406 PRINTS Inositol monophosphatase superfamily signature 139 155 IPR000760 GO:0046855
Cla01g01022 406 PANTHER PHOSPHATASE IMPL1, CHLOROPLASTIC 51 213 - -
Cla01g01022 406 PANTHER PHOSPHATASE IMPL1, CHLOROPLASTIC 233 404 - -
Cla01g01022 406 PANTHER INOSITOL MONOPHOSPHATASE 51 213 - -
Cla01g01022 406 PANTHER INOSITOL MONOPHOSPHATASE 233 404 - -
Cla01g01022 406 Gene3D - 82 262 - -
Cla01g01022 406 Pfam Inositol monophosphatase family 85 379 IPR000760 GO:0046855
Cla01g01022 406 SUPERFAMILY Carbohydrate phosphatase 84 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01022 K01092 E3.1.3.25, IMPA, suhB; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] - csv:101218450 673.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01022 Cla-Chr1:15649121 Cla01g01044 Cla-Chr1:16156946 5.37E-35 dispersed
Cla01g01022 Cla-Chr1:15649121 Cla01g02093 Cla-Chr1:35257515 5.68E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g60 Blo01g00448 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0914 Cone19ag0910 Cone6ag0541 Cone9ag0551 . . . . . . . . . . Bma01g00117 Bma06g00731 . . . . . . . . Cpe07g00080 . . . . . . . Cla01g01022 Cam01g1059 . Cco01g1115 Clacu01g1050 Cmu01g1004 Cre01g0946 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011090 1 2 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01022 Cla_Chr01 FPKM 0.540404 0.189485 0.231468 0.616081 1.045782 1.034737 1.420733 0.270486 0.15282 0.161008