Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01070 ATGGCTGCTGGTGGTGATTTCTTGCCCCCCTTGGTTATGCTGGTTGTCCAATTCCTATATGCAGGTTTGAATATTACATCAAAGTTAGCCATGGAGTTTGGGATGAACCCACTAGTTCTAGTTGCTTACAGGCAGATGTTTGCTACCATAGCCATAGCTCCTTGTGCATACTGGTTTGAGAGGTATGTAAAAGGGAGACCCAAGATTACAAAGCCTATCCTGTTTCAGATTCTACTTTGTTCCTTAACTGGGGCAACAGCAAACCAAGTCTTTTACTACGTTGGGTTGAAATATTCAACCCCCACCATCGCATGCGCATTGACCAATGTTCTGCCTGCTGCAACTTTTGTCCTCGCTGTTCTTTTCAGGTACCTAAAAATCCTCTTTTTTCACCATTTTCTGAACACAGTGGCAGACATTTCTGCAACTGTTTCTCCTATGATCCAAAGTTCATACAATCTTTTTCTGTTTGATAGACAAGAATCTGTGGGGATCAAAACAAGCCCAGGTGCAGCTAAGGTGATGGGGACTGTTGTATGTGTCGGAGGGGCAATGTTGCTGTCGTTCTACCGTGGACAAACAATCCAGCTTGGTGAATCTGGTATTCATTGGAAGTATGCCGAGTTAATGAGGGGGGGAAGCTCAACCAACCAAGGCAGCAGCATCTGGGGCTCCCTCTGCTTGATCATAAGCTCTGTCGCTTGGGCGGCTTGGTTTGTCATCCAAGCAAGAGTGAATGAGAAGTTTCCAGCACCCTACACGAGCACAGCTCTCATGACTTTCATGGCAACCATTCAATGTGGAGCAATTGCAGTTGGCGTTGAGCACAAGACGGCTGCAGCTTGGTCATTGAAAAGTTCAATCAGGCTTGTTGGCGCTCTCTATGCGGGAGTGGCGTGCTCTGGGGTGGCATTTTGCCTAACCTCCTGGAGTATCCAAAAGAAAGGTCCTCTCTATGCCTCAGTTTTCAGCCCCTTCTTGCTCGTTATTGTGGCTATCTTCAGCTGGGCCTTTTTTCAAGAAAAATTATACGTCGGAACTGTTGTAGGGTCATTGTTGATTGTTGTTGGGCTATATGCTGTCCTATGGGGAAAGACCAAGGAGGTGAAACTACAACAACATATCGAAATGGCGGCGGCAGCAGAGGCAAAGCTAGATGACTGTAATAACAAAGACTTAGAAGAACAGTCCTATGTGGTTTCAAATGCCACTATTCTCCATAAGTAA 1227 45.88 MAAGGDFLPPLVMLVVQFLYAGLNITSKLAMEFGMNPLVLVAYRQMFATIAIAPCAYWFERYVKGRPKITKPILFQILLCSLTGATANQVFYYVGLKYSTPTIACALTNVLPAATFVLAVLFRYLKILFFHHFLNTVADISATVSPMIQSSYNLFLFDRQESVGIKTSPGAAKVMGTVVCVGGAMLLSFYRGQTIQLGESGIHWKYAELMRGGSSTNQGSSIWGSLCLIISSVAWAAWFVIQARVNEKFPAPYTSTALMTFMATIQCGAIAVGVEHKTAAAWSLKSSIRLVGALYAGVACSGVAFCLTSWSIQKKGPLYASVFSPFLLVIVAIFSWAFFQEKLYVGTVVGSLLIVVGLYAVLWGKTKEVKLQQHIEMAAAAEAKLDDCNNKDLEEQSYVVSNATILHK 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16934707 16939946 + ClCG01G010790.2 Cla01g01070 264659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01070 408 Pfam EamA-like transporter family 223 362 IPR000620 GO:0016020|GO:0016021
Cla01g01070 408 Pfam EamA-like transporter family 11 123 IPR000620 GO:0016020|GO:0016021
Cla01g01070 408 PANTHER WAT1-RELATED PROTEIN 9 124 - -
Cla01g01070 408 PANTHER WAT1-RELATED PROTEIN 154 379 - -
Cla01g01070 408 PANTHER WAT1-RELATED PROTEIN 9 124 IPR030184 GO:0016021|GO:0022857
Cla01g01070 408 PANTHER WAT1-RELATED PROTEIN 154 379 IPR030184 GO:0016021|GO:0022857
Cla01g01070 408 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 122 - -
Cla01g01070 408 SUPERFAMILY Multidrug resistance efflux transporter EmrE 280 366 - -
Cla01g01070 408 Coils Coil 371 391 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01070 Cla-Chr1:16934707 Cla02g01456 Cla-Chr2:29106269 3.61E-138 dispersed
Cla01g01070 Cla-Chr1:16934707 Cla10g01563 Cla-Chr10:31033344 2.09E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01070 - - csv:101215353 680.248