Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01082 ATGGAGAGAAAATACATGTTCTTAATTTGTAATGGAATCCTGTTTCTTCTAGCCACTTCCTCTGTTATTGAACATTCTTCTTCTTCTTCTTCTTCCTCTTCTTTTGGGTCTTGTTCTTTTCCCCACTCTCATCATCATCACTTTGAAGAATATGATCTTGTGGCTGCCATTGATGAATCTGATTCTGAGGAATCACAACACCAAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTTACAAAGTTGAATTAGAAGAAGACATTTACAAAGTTGAATTACAAGAAGACATTTACAAAGGTGACTTACAAGAAGATGAAGAGTGTTTTACAGAAGAAGAAGAAGAAGAAGAAGGAAAAAGGAGGGAATTAGAGGTGGTGGTGAGTACAGAAGAATTGAACAAGAAAATTGAAGAGTTTATTAGGAAAATGAAGGAAGAAATGAGGATTGAAGCAGCTCAAACTCAACTAATTGCAGTTTTCTTTCTTACTCTCGCCTCCAGCGATAAGTCGGATTCGAATACCCGGAATCTGGAAGGACCCCATTTCGATTGTGCTGTGAAAATTGAAGGCATTGACCTGTGTAATGTGCCTGAGGAAGGGTATGTTTCGCCAGTTTCTGCCTGTGGATTAGTATCATGTGATGGAATTTTTATGTTGAGCTTTATTGATTTTCTGATGGACTCTGGTGATGTTGAGCAATCCTTGCTTCCTAAGCTCTCCGATTCTGATAAGAGGAAATCTCTCCAGAGAAGAAAATCTAACCGTCATGGTAGTTTTTCACATTCAGTAGAAAATAATAATCAACCACAAAATTATGATGTAATATCTCATCAACGTATTGCTGTTTCACAAGTTAGTTTTAGGAAAGTATTTGTTCTTCTCGCGACTTATTTGGGAGGGGGCACGTTTTGTTTTTTCCTTGTTCGGGATCAGATCACTGGCAAGAAAACAAATGGGATTGTTGATGCCATTTACTTTTGTGTTGTAACAATGACCACCGTTGGGTATGGTGATCTTGTTCCTAACAGCATAGTTGCAAAACTACTTGCATGTGCTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATCCTTAGCAAGGCAGCCGATTACATTGTGGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGTACATGAGGAAAAAGATCAGCTCCAGCGAGATCCTTCAGGAATCTGAGGCTCACAAATTGAAATACAAATTCATTATGACTGGAATCCTCCTTTGGACTCTTGTCTTTGTTGGAGCTCTTTTCTTGACTGTGGTTGAGAAGCTAGAGTTCATAGATGCCTTTTATTGCGTTTGTTCCACTATCACGACTCTTGGATATGGGGATGAGAGCTTCTCTACAACAGCTGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCTTAGCACAGTTCTTTCTGTACCTTGCAGAATTACACACAGAAAGGAGACAAGAATCACTGGTAAATTGGGTTCTCAGCCGAAGCCTCACGTACTCGGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGCGCTGCAGAATTTGTTATATATAAACTGAAGGAAATGGGGAAGATCAATCAGGAAGACGTTTCTCCCATACTTGAAACTTTTAAGAAGCTTGACATTGATCAATCAGGAAGTTTAACAGAAGCTGATATAGTAACCTCATCGTCGTTGGCTTAA 1731 38.99 MERKYMFLICNGILFLLATSSVIEHSSSSSSSSSFGSCSFPHSHHHHFEEYDLVAAIDESDSEESQHQNQEEEEEEEEEEEEEEIYKVELEEDIYKVELQEDIYKGDLQEDEECFTEEEEEEEGKRRELEVVVSTEELNKKIEEFIRKMKEEMRIEAAQTQLIAVFFLTLASSDKSDSNTRNLEGPHFDCAVKIEGIDLCNVPEEGYVSPVSACGLVSCDGIFMLSFIDFLMDSGDVEQSLLPKLSDSDKRKSLQRRKSNRHGSFSHSVENNNQPQNYDVISHQRIAVSQVSFRKVFVLLATYLGGGTFCFFLVRDQITGKKTNGIVDAIYFCVVTMTTVGYGDLVPNSIVAKLLACAYVFTGMTLGGMILSKAADYIVEKQEILLVKAMYMRKKISSSEILQESEAHKLKYKFIMTGILLWTLVFVGALFLTVVEKLEFIDAFYCVCSTITTLGYGDESFSTTAGRVFAVIWIMSSTICLAQFFLYLAELHTERRQESLVNWVLSRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKINQEDVSPILETFKKLDIDQSGSLTEADIVTSSSLA 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17176131 17183279 + ClCG01G010940.2 Cla01g01082 264671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01082 576 Coils Coil 53 93 - -
Cla01g01082 576 SUPERFAMILY EF-hand 504 570 IPR011992 -
Cla01g01082 576 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 246 569 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cla01g01082 576 MobiDBLite consensus disorder prediction 59 85 - -
Cla01g01082 576 Gene3D - 513 574 - -
Cla01g01082 576 Coils Coil 135 155 - -
Cla01g01082 576 PRINTS Two pore domain K+ channel signature 452 461 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cla01g01082 576 PRINTS Two pore domain K+ channel signature 335 363 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cla01g01082 576 Pfam Ion channel 300 379 IPR013099 -
Cla01g01082 576 Pfam Ion channel 422 490 IPR013099 -
Cla01g01082 576 MobiDBLite consensus disorder prediction 248 272 - -
Cla01g01082 576 ProSitePatterns EF-hand calcium-binding domain. 557 569 IPR018247 -
Cla01g01082 576 Gene3D - 288 384 - -
Cla01g01082 576 SUPERFAMILY Voltage-gated potassium channels 409 507 - -
Cla01g01082 576 MobiDBLite consensus disorder prediction 65 85 - -
Cla01g01082 576 SUPERFAMILY Voltage-gated potassium channels 289 393 - -
Cla01g01082 576 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 246 569 - -
Cla01g01082 576 Gene3D - 389 503 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01082 Cla-Chr1:17176131 Cla09g02066 Cla-Chr9:38236836 1.35E-119 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01082 K05389 - csv:101214791 623.239