Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01115 ATGAAGATGGAACTTTCTTCCTCTAAATCCATTCAAGAAGATATAATTCTCTGGATGGAAGACCAAAAGATAGGAGTGGGCTTGATAATCTCTTTGTTAGTTCTGATGGCCTCAAAGAGTTCGAAGCCTTCTGTAAAGCAACCTAAGGGGATAATTGGCGTTCAAGCTACGGATTCAGGTGATCTAAAGTCCTTACCTTCACAGACTTCATTGGGAAACAAAATTGGTTCTGTTATCTCTGGAGATGTATTGAACTCTACACAGAAATCCTTGAATCAGTCTACTTTGATTGATTCATCAAAGAGCAAATCCTCAAGTTTAAATCCAAAAGAGTCTACCGAGTCTTGTAATCAGAAAGTCAAAGAAAATTCCTCAAAGTCTGGCTCTAAGACCTTGACAGAAGGAGATCCTGCTCTTAGCGGGACTCGGGGCTTAGCAGAGGACTCTATAGATCCTGAGAAGAAAACATCGGAATGTGGGAGTGGGAAGGATAGTTCTGTTTCTGCCAAAGTCAGTGATGGAACAAACAGTATTGCCAAGACTAGTGGAAGTGCGAAAATTAGCGACCGTGTTGAGATGGTTGAGAGTGGCAAGAGCAGCATGTGTCGAGGAAGCACTAGCAGCGACATCAGTGACGAAAGCACCTGTAGCAGCTTTAGTAGTAGTATCAGTAAGCCTCACAAAGCAAATGACTTGAGATGGGAGGCCATCCAAGCTGTACGTGCAAGGGATGGGATATTGGGATTAGGTCATTTTAGACTATTGAAGAGACTGGGATGTGGGGATATCGGAAGCGTCTACTTGTCGGAGTTGAGTGGTACTAAATGTTATTTTGCTATGAAGGTCATGGACAAAGGGTCTCTAGCAAGCCGAAAGAAGTTGCTTCGAGCTCAGACTGAAAGAGAAATATTGCAGTCTCTTGATCATCCATTCCTTCCTACATTATATACTCATTTTGAGACTGATAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTGCACACTCTAAGGCAGAGGCAGCCAGGGAAGCATTTTCCCGAGCAGGCGGTGAAATTTTATGTAGCAGAGGTTCTCCTAGCACTTGAGTATCTTCACATGCTTGGGATTGTATACCGGGACCTTAAGCCTGAGAATGTTCTTGTGAGGGAAGATGGACACATAATGCTTTCGGACTTTGATCTTTCATTAAGATGTGCAGTTAGTCCAACATTAGTGAAGGGTTCATGTTCTGAGTCTGAACCCTTGAGAAAGAATTCAGCTTATTGTGTTCAACCGGCTTGTATCGAACCTTCCTGCATCCAGCCATCCTGTGTAGTTCCTACGACATGCTTCTCTCCCCGACTTTTCTCTAGCAAATCAAAGAAGGATAGAAAACCCAAGACTGAAATAGGAAACCAGGTAACACCATTGCCAGAGCTCATTGCAGAGCCTACGGAGGCGAGATCAATGTCATTTGTTGGTACACACGAGTATTTGGCACCGGAGATCATTAAAGGCGAAGGTCATGGAAGTGCTGTTGACTGGTGGACTTTTGGAATCTTTCTATACGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCCACGTTGTTCAACGTTGTTGGTCAGCCTTTGCGGTTTCCTGAATCACCAGTTGTCAGTTTTGCTGCAAGGGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAACATAGATTAGCTTACAAACGAGGGGCAACTGAGATCAAGCAACATCCCTTCTTTGAAGGTGTCAACTGGGCATTGATACGTTGCGCTTCGCCACCAGAAGTACCAAAGCCTGTTGAGATTGAGAGGATACCCTCACCAGCACCTCCAGCGAGTGGAAAAGCTGTAATGGCTAGACCTGGTCCCGATTCCAAATCGTCTGATAATTATCTCGAGTTTGATTTCTTTTAG 1941 44.36 MKMELSSSKSIQEDIILWMEDQKIGVGLIISLLVLMASKSSKPSVKQPKGIIGVQATDSGDLKSLPSQTSLGNKIGSVISGDVLNSTQKSLNQSTLIDSSKSKSSSLNPKESTESCNQKVKENSSKSGSKTLTEGDPALSGTRGLAEDSIDPEKKTSECGSGKDSSVSAKVSDGTNSIAKTSGSAKISDRVEMVESGKSSMCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVRARDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEPLRKNSAYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPAPPASGKAVMARPGPDSKSSDNYLEFDFF 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18346000 18349586 - ClCG01G011290.2 Cla01g01115 264704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01115 646 MobiDBLite consensus disorder prediction 614 639 - -
Cla01g01115 646 SMART serkin_6 252 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01115 646 Gene3D Transferase(Phosphotransferase) domain 1 336 404 - -
Cla01g01115 646 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 38 646 - -
Cla01g01115 646 PANTHER FLIPPASE KINASE 1-RELATED 38 646 - -
Cla01g01115 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 373 385 IPR008271 GO:0004672|GO:0006468
Cla01g01115 646 CDD STKc_phototropin_like 251 612 - -
Cla01g01115 646 Gene3D Phosphorylase Kinase; domain 1 250 335 - -
Cla01g01115 646 MobiDBLite consensus disorder prediction 92 136 - -
Cla01g01115 646 MobiDBLite consensus disorder prediction 92 209 - -
Cla01g01115 646 Gene3D Transferase(Phosphotransferase) domain 1 483 607 - -
Cla01g01115 646 ProSiteProfiles Protein kinase domain profile. 252 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01115 646 Pfam Protein kinase domain 486 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01115 646 Pfam Protein kinase domain 253 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01115 646 MobiDBLite consensus disorder prediction 161 184 - -
Cla01g01115 646 SUPERFAMILY Protein kinase-like (PK-like) 228 617 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01115 Cla-Chr1:18346000 Cla04g00971 Cla-Chr4:24841948 0 dispersed
Cla02g02141 Cla-Chr2:36474301 Cla01g01115 Cla-Chr1:18346000 1.76E-36 dispersed
Cla03g00601 Cla-Chr3:7033181 Cla01g01115 Cla-Chr1:18346000 1.40E-134 transposed
Cla05g00012 Cla-Chr5:159566 Cla01g01115 Cla-Chr1:18346000 0 transposed
Cla10g01319 Cla-Chr10:28103576 Cla01g01115 Cla-Chr1:18346000 0 transposed
Cla01g01115 Cla-Chr1:18346000 Cla01g02066 Cla-Chr1:35111622 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80255 PF00069 Pkinase 1.00E-36 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01115 K08286 - csv:101213662 1095.49