Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01132 ATGAGAAGGCAAAAGAGGCCATATTTTACTCCTATAAGAAGCATATTAACGGCTTTGCAGCCATTCTGGACGAGGAAGACGCAACCCAACTTGCAAGTAGCAGCAGTATTGCCAAACAGAGCGAAAGAATTACACACAACACATTCATGGGAATTTATGCATTTGGAGAAGAATGGGGTGATTCCTCCTTCTTCTCCTTGGCACAGGGCTAAATCTGGAAAAGATGTCATTATTGCCAACCTTGACACTGGTGTATGGCCAGAGTCCAAGAGTTTTGGAGAACATGGCATAGTTGGACCTGTTCCATCAAAGTGGAAAGGAGGTTGCACTGATAAAACCCCTGATCGAGTGCCTTGTAACAGGAAATTAATCGGAGCAAAGTACTTCAACAAGGGATTCCTGGCCTACTTGAAATCTGAAAATTATACGGACCTCTCATCTGTCATCAACTCCACTCGCGACTACGAAGGTCATGGGTCTCACACCTTGTCCACGGCCGGGGGTAGCTACGTGTCTGGTGCCAGCGTGTTTGGGTCGGGTGTCGGAACTGCCAAAGGTGGATCTCCCAAGGCTCGCGTTGCTGCCTACAAGGTCTGCTGGCCACTTGAGGGTGGTGGGTGCTTCGATGCCGACATCGCCGAGGCATTTGACCATGCCATCGATGATGGTGTCGATGTTCTTTCACTCTCCCTCGGCGGCGATCCAGCCGATTACTTTGGCGATTCCATTGCCATTGCCTCTTTCCATGCAATGAAGAAGGGTATCCCTGTGGTGTGCTCTGCCGGCAACTCCGGCCCTGATGCCTGGACTGTTTCTAATACTGCACCTTGGATTTTGACGGTTGCTGCAAGTACTTTAGACCGTGAGTTTCAGGCTCCTGTTGAGCTCCAAAATGGCCATCGTTACATGGGTTCGAGCCTTTCGAAAGCATTGAGAGAAAAGAAGTTGTACCCATTGATTACGGGAGCTCAGGCGAAAACAAAGAACGCCACAGCGGATGAGGCCATGCTTTGCAAGCCGGAAACATTGGATCATTCAAAAGTAAAAGGGAAGATAGTGGCTTGCTTGAGAGGAGACAATGCAAGAGTGGACAAAGGAGAAGAAGCTGCTCTTGCCGGTGCTGCCGGAATGATTCTATGCAACGATATGCTTAGTGGATTTGAAACCATTGCTGATCCCCATGTTCTTCCAGCTTCCCATATCAATTACAATGACGGCCAAGCTGTTCTCTCTTACATCAATTCCACCAAAAATCCAATGGGTTATTTAATCCCACCATCGGCTAAAGTTAACACCAAGCCTGCTCCCTCTATGGCGGCCTTCTCATCTCGAGGACCCAACTTTATTTCACCCGAGATTATCAAGCCGGATGTGACTGCACCTGGCGTAAACATAATCGCCGCATTCTCAGAAGCCGTAAGCCCAACAGGTGAGGCATTCGACAACAGAACGGCTCCATTCATAACAATGTCAGGCACCTCCATGTCTTGCCCACACGTGGCAGGCCTGGTTGGCCTCCTCCGAACTCTCCACCCTCACTGGAGCCCTTCTGCCATCAAATCTGCCATCATGACCTCTGCCAGGGTTCTTGACAACACAATGAAACCCATGCTTGACGGTGGCTCCCCTGACCTCGCCCCTGCCACCCCCTTCGCCTACGGCTCCGGCCACATTCGCCCCGTGGGAGCCATCGACCCTGGCCTCGTCTATGACCTCTCACCCAACGACTACTTGGAATTCCTCTGCGCTAGCGGGTACGATGTGAAGAGCATTCGGGCATTCTCTGACGGCCCTTTCAACTGCCCTGCCTCTGCTTCTATTTTGAACTTCAATTACCCCTCCATTGGGGTTCAGAATTTGAATGGAAGTGTCACCCTCACTAGGAAGCTGAAGAACGTTGGCACTCCTGGGGTTTACAGACCCAAAATTCTCCACCCGGATGGAGTTAAAGTTTCACTGAAGCCTAGAGTTCTCAAGTTTGAGAGAGTTGCAGAGGAGAAGAGCTTTGAATTGACCATCACCGGAGCTGTGCCACAGAATCAGGTTGTTAACGGCGTGTTGATTTGGACGGACGGCAAGCACTTTGTTAGAAGTCCCATTCTCGTTTCTTCTAACTTGTTCTGA 2124 50.14 MRRQKRPYFTPIRSILTALQPFWTRKTQPNLQVAAVLPNRAKELHTTHSWEFMHLEKNGVIPPSSPWHRAKSGKDVIIANLDTGVWPESKSFGEHGIVGPVPSKWKGGCTDKTPDRVPCNRKLIGAKYFNKGFLAYLKSENYTDLSSVINSTRDYEGHGSHTLSTAGGSYVSGASVFGSGVGTAKGGSPKARVAAYKVCWPLEGGGCFDADIAEAFDHAIDDGVDVLSLSLGGDPADYFGDSIAIASFHAMKKGIPVVCSAGNSGPDAWTVSNTAPWILTVAASTLDREFQAPVELQNGHRYMGSSLSKALREKKLYPLITGAQAKTKNATADEAMLCKPETLDHSKVKGKIVACLRGDNARVDKGEEAALAGAAGMILCNDMLSGFETIADPHVLPASHINYNDGQAVLSYINSTKNPMGYLIPPSAKVNTKPAPSMAAFSSRGPNFISPEIIKPDVTAPGVNIIAAFSEAVSPTGEAFDNRTAPFITMSGTSMSCPHVAGLVGLLRTLHPHWSPSAIKSAIMTSARVLDNTMKPMLDGGSPDLAPATPFAYGSGHIRPVGAIDPGLVYDLSPNDYLEFLCASGYDVKSIRAFSDGPFNCPASASILNFNYPSIGVQNLNGSVTLTRKLKNVGTPGVYRPKILHPDGVKVSLKPRVLKFERVAEEKSFELTITGAVPQNQVVNGVLIWTDGKHFVRSPILVSSNLF 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18808408 18811440 + ClCG01G011460.1 Cla01g01132 264721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01132 707 CDD Peptidases_S8_3 42 527 IPR034197 -
Cla01g01132 707 Pfam PA domain 332 408 IPR003137 -
Cla01g01132 707 PRINTS Subtilisin serine protease family (S8) signature 73 92 IPR015500 -
Cla01g01132 707 PRINTS Subtilisin serine protease family (S8) signature 491 507 IPR015500 -
Cla01g01132 707 PRINTS Subtilisin serine protease family (S8) signature 154 167 IPR015500 -
Cla01g01132 707 Gene3D Peptidase S8/S53 domain 75 577 IPR036852 GO:0004252|GO:0006508
Cla01g01132 707 SUPERFAMILY Subtilisin-like 44 568 IPR036852 GO:0004252|GO:0006508
Cla01g01132 707 ProSiteProfiles Serine proteases, subtilase domain profile. 49 564 - -
Cla01g01132 707 ProSitePatterns Serine proteases, subtilase family, serine active site. 492 502 IPR023828 -
Cla01g01132 707 CDD PA_subtilisin_like 294 423 - -
Cla01g01132 707 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 28 702 IPR045051 -
Cla01g01132 707 Gene3D - 287 431 - -
Cla01g01132 707 SUPERFAMILY PA domain 345 416 IPR046450 -
Cla01g01132 707 Pfam Subtilase family 73 533 IPR000209 GO:0006508|GO:0008236
Cla01g01132 707 PANTHER SUBTILISIN-LIKE PROTEASE 28 702 - -
Cla01g01132 707 Gene3D - 581 705 - -
Cla01g01132 707 Pfam Fibronectin type-III domain 609 702 IPR041469 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01129 Cla-Chr1:18747009 Cla01g01132 Cla-Chr1:18808408 9.46E-27 dispersed
Cla01g01132 Cla-Chr1:18808408 Cla02g00312 Cla-Chr2:3021280 0 dispersed
Cla01g01128 Cla-Chr1:18746496 Cla01g01132 Cla-Chr1:18808408 4.49E-75 proximal
Cla01g01131 Cla-Chr1:18797760 Cla01g01132 Cla-Chr1:18808408 1.68E-30 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01132 - - csv:101213582 1194.49