Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01215 ATGGCCAATCTCTCTAATTTCCATGGAATAATCCACCATAATCCTTCTCTTCCTTTCATGAATCCAGAAGGCTCAGCTTTTGATTTTGGAGAGCTGGAAGAAGCCATAGTTTTGCAGGGAGTTAAGCTTGGAAATGATGAACCCAAATCTCCACATTTTCTAACAGGAAGGCCTGCTGCTACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTTCAACAAACCCCAACATTGGGAGGAGGTTCAAAGTCAGAGAGTACAGATTCAGGATCAGCAAATATGAACAATACTCTCACAAGCAAAACAGAGTTGGAAATGGAACCTGAATCACCAATAAGTAGAAGAGGTTGTTCTTCAAATCAAGGATTATTTGATCAAAATCATCATCTTCTTCAACTCCAACATCTTCAATCAGAGTTTGAAGATGATGCCTTGAGAACACAACCATCATTACACCAAAATCAATCTCCTCCCAAAGAAAAGAGGAAAGGAGCTGGTTCAACATCAGAGAGACAGCTTGATGCCAAGACACTGAGAAGATTAGCTCAAAACAGAGAAGCTGCAAGAAAGAGCCGACTGAGGAAGAAGGCTTATATTCAACAGCTAGAGTCTAGTAGAATCAAGCTCTCTCAGCTTGAACAAGACCTCCATAGAGCACGTTCCCAGGGATTGTTTCTAGGTGGTTGTGGTGGTGTAATGGGTGGCAATATCAGCTCAGGAGCTGCAATATTTGACATGGAGTATGCGCGGTGGCTAGACGAGGACCACCGTTTGATGGCGGAGCTGCGGGCGGCGTTGCAAGGGCATCTCCCAGACGGGGATCTCCGAGCAATAGTAGAGAGTTACATCTCTCACTACGACGAGATATTTCACCTGAAAGGCGTGGCAGCGAAATCGGACGTGTTTCATTTGATCACAGGAATGTGGATGACTCCGGCGGAGCGTTGCTTCCTGTGGATCGGCGGATTCCGGCCATCAAAGCTCATAGAGATGCTAATTCCGCAATTAGACACATTAACAGAGCAACAAGCAATGGGAATATGTAATTTGCAAAGATCTTCACAAGAAACAGAGGATGCTCTTTATCAGGGGCTTGAGCAGCTGCAGCATTCTCTCATTATCACCATCGCCGGCACCGCTGTCGTCGACGGCATTAACCATATGGCCCTCGCCGCCGGCAAGCTCTCCAATCTTGAAGGCTTCATCCGCCAGGCTGATATGTTGAGACAACAAACGCTTCATCAGTTACATCGAATATTGACAATCCGACAGGCAGCTCGATGTTTCGTGGTAATTGGAGAGTATTATGGAAGACTTCGAGCTCTTAGTTCCTTGTGGGTCTCTCGACCGAGAGAGAGCAGCTGCTTGAATGATGAAAATTCATGCCAAACAACAACAGAGCTACAAATGATTCAGAGTTCCCACACCCATTTCCCAAACTTTTGA 1446 45.57 MANLSNFHGIIHHNPSLPFMNPEGSAFDFGELEEAIVLQGVKLGNDEPKSPHFLTGRPAATLEMFPSWPIRFQQTPTLGGGSKSESTDSGSANMNNTLTSKTELEMEPESPISRRGCSSNQGLFDQNHHLLQLQHLQSEFEDDALRTQPSLHQNQSPPKEKRKGAGSTSERQLDAKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSQGLFLGGCGGVMGGNISSGAAIFDMEYARWLDEDHRLMAELRAALQGHLPDGDLRAIVESYISHYDEIFHLKGVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLIPQLDTLTEQQAMGICNLQRSSQETEDALYQGLEQLQHSLIITIAGTAVVDGINHMALAAGKLSNLEGFIRQADMLRQQTLHQLHRILTIRQAARCFVVIGEYYGRLRALSSLWVSRPRESSCLNDENSCQTTTELQMIQSSHTHFPNF 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22588332 22593282 + ClCG01G012300.2 Cla01g01215 264804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01215 481 Pfam bZIP transcription factor 175 216 IPR004827 GO:0003700|GO:0006355
Cla01g01215 481 CDD bZIP_HBP1b-like 176 226 - -
Cla01g01215 481 MobiDBLite consensus disorder prediction 148 174 - -
Cla01g01215 481 SUPERFAMILY Leucine zipper domain 176 218 IPR046347 GO:0003700|GO:0006355
Cla01g01215 481 PANTHER TRANSCRIPTION FACTOR TGA9 51 459 - -
Cla01g01215 481 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 179 194 IPR004827 GO:0003700|GO:0006355
Cla01g01215 481 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 174 218 IPR004827 GO:0003700|GO:0006355
Cla01g01215 481 ProSiteProfiles DOG1 domain profile. 241 449 IPR025422 GO:0006351|GO:0043565
Cla01g01215 481 Gene3D - 175 224 - -
Cla01g01215 481 Coils Coil 195 222 - -
Cla01g01215 481 MobiDBLite consensus disorder prediction 73 121 - -
Cla01g01215 481 SMART brlzneu 172 238 IPR004827 GO:0003700|GO:0006355
Cla01g01215 481 PANTHER TRANSCRIPTION FACTOR TGA9 51 459 - -
Cla01g01215 481 MobiDBLite consensus disorder prediction 73 106 - -
Cla01g01215 481 Pfam Seed dormancy control 259 333 IPR025422 GO:0006351|GO:0043565
Cla01g01215 481 MobiDBLite consensus disorder prediction 156 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01215 Cla-Chr1:22588332 Cla02g02151 Cla-Chr2:36609167 6.53E-175 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60410 PF14144 DOG1 7.30E-31 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01215 K14431 - csv:101204604 893.649