Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g01224 | ATGGTTTATGTTAACCCCTTTGAAGATATGGGTTTGAGAAATCATATGGCAGATGATAACATCTTTTGTCTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACAACCCTTCTCCTTCTCCCTCCATCTCTCTCTCGTCTTCGTCTTCGTCTATCTCCGACCGAGATTTAATCTCTCAGACGAGCGTCCAATGCGTTAATACAGGGTTAGTTCCTGATCAACAACATGAATTTTTTGTGTCGTCCCGATGCCTGCCTTTGTTCACCGAGACGGAGGCCTTGCCGAAGAACGACAAAGAATTAGGGGCTCGAGCTCAAGATCATGAAAGGAAATATTTGGGAATTAAAGAGGAGAATGAAGATATGGAGAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGGAAAGAACTTGAATGTTTGTGTAAAGAAAGAAGAAGTAAGCTGCCTGAAGAAAAGCTTCTCTAATTTTAACAATCAAGGAAGGTTTTGGATCCCAACACAGGCTCAGATCCTTGTTGGTCCTATGCAATTTACTTGCTCCATCTGCAACAAGTCATTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCATGGATCTGAGTACAGAAAAGGGCCAGAATCTCTTAGAGGAACACAGCCAGCAGCAATGCTAAGGCTTCCATGTTATTGCTGTGCTCAAGGCTGCAAGAACAACATTAACCATCCAAGAGCCAAGCCATTGAAAGACTTCAGAACCCTTCAAACCCATTACAAAAGAAAGCATGGTTCCAAGCCATTTATGTGTAGAAAATGTGGCAAAACTTTGGCTGTTAAAGGAGATTGGAGAACCCATGAAAAAAATTGTGGTAAGCTTTGGTATTGCAGCTGTGGCTCAGATTTCAAACACAAAAGATCTCTTAAAGATCACATCAGATCCTTTGGCAAAGGCCACTCCCCATGCTCCTCTCTTGATGATGAATGCCTCACTGGGTCTGATCAAGAAGATCACTTCACTTAA | 1020 | 42.16 | MVYVNPFEDMGLRNHMADDNIFCLQSPTFIEWLKPHNPSPSPSISLSSSSSSISDRDLISQTSVQCVNTGLVPDQQHEFFVSSRCLPLFTETEALPKNDKELGARAQDHERKYLGIKEENEDMEKVEVGLHIGLPNVGDGKNLNVCVKKEEVSCLKKSFSNFNNQGRFWIPTQAQILVGPMQFTCSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHSPCSSLDDECLTGSDQEDHFT | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 23131996 | 23135095 | + | ClCG01G012380.1 | Cla01g01224 | 264813 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g01224 | 339 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 183 | 210 | IPR013087 | - | |
Cla01g01224 | 339 | MobiDBLite | consensus disorder prediction | 316 | 339 | - | - | |
Cla01g01224 | 339 | Coils | Coil | 106 | 126 | - | - | |
Cla01g01224 | 339 | SMART | c2h2final6 | 230 | 262 | IPR013087 | - | |
Cla01g01224 | 339 | SMART | c2h2final6 | 267 | 287 | IPR013087 | - | |
Cla01g01224 | 339 | SMART | c2h2final6 | 183 | 205 | IPR013087 | - | |
Cla01g01224 | 339 | SUPERFAMILY | beta-beta-alpha zinc fingers | 169 | 206 | IPR036236 | - | |
Cla01g01224 | 339 | Gene3D | Classic Zinc Finger | 182 | 205 | - | - | |
Cla01g01224 | 339 | PANTHER | ZINC FINGER PROTEIN WIP2 | 10 | 335 | IPR043584 | GO:0003700|GO:0010468 | |
Cla01g01224 | 339 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 185 | 205 | IPR013087 | - | |
Cla01g01224 | 339 | Gene3D | Classic Zinc Finger | 263 | 322 | - | - | |
Cla01g01224 | 339 | PANTHER | ZINC FINGER PROTEIN WIP3-LIKE | 10 | 335 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01224 | Cla-Chr1:23131996 | Cla04g00085 | Cla-Chr4:2589146 | 2.13E-102 | dispersed | |
Cla01g01224 | Cla-Chr1:23131996 | Cla02g02261 | Cla-Chr2:37716394 | 2.65E-99 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60411 | PF13912 | zf-C2H2_6 | 5.70E-05 | CL0361 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g01224 | - | - | bhj:120082596 | 610.912 |