Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01224 ATGGTTTATGTTAACCCCTTTGAAGATATGGGTTTGAGAAATCATATGGCAGATGATAACATCTTTTGTCTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACAACCCTTCTCCTTCTCCCTCCATCTCTCTCTCGTCTTCGTCTTCGTCTATCTCCGACCGAGATTTAATCTCTCAGACGAGCGTCCAATGCGTTAATACAGGGTTAGTTCCTGATCAACAACATGAATTTTTTGTGTCGTCCCGATGCCTGCCTTTGTTCACCGAGACGGAGGCCTTGCCGAAGAACGACAAAGAATTAGGGGCTCGAGCTCAAGATCATGAAAGGAAATATTTGGGAATTAAAGAGGAGAATGAAGATATGGAGAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGGAAAGAACTTGAATGTTTGTGTAAAGAAAGAAGAAGTAAGCTGCCTGAAGAAAAGCTTCTCTAATTTTAACAATCAAGGAAGGTTTTGGATCCCAACACAGGCTCAGATCCTTGTTGGTCCTATGCAATTTACTTGCTCCATCTGCAACAAGTCATTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCATGGATCTGAGTACAGAAAAGGGCCAGAATCTCTTAGAGGAACACAGCCAGCAGCAATGCTAAGGCTTCCATGTTATTGCTGTGCTCAAGGCTGCAAGAACAACATTAACCATCCAAGAGCCAAGCCATTGAAAGACTTCAGAACCCTTCAAACCCATTACAAAAGAAAGCATGGTTCCAAGCCATTTATGTGTAGAAAATGTGGCAAAACTTTGGCTGTTAAAGGAGATTGGAGAACCCATGAAAAAAATTGTGGTAAGCTTTGGTATTGCAGCTGTGGCTCAGATTTCAAACACAAAAGATCTCTTAAAGATCACATCAGATCCTTTGGCAAAGGCCACTCCCCATGCTCCTCTCTTGATGATGAATGCCTCACTGGGTCTGATCAAGAAGATCACTTCACTTAA 1020 42.16 MVYVNPFEDMGLRNHMADDNIFCLQSPTFIEWLKPHNPSPSPSISLSSSSSSISDRDLISQTSVQCVNTGLVPDQQHEFFVSSRCLPLFTETEALPKNDKELGARAQDHERKYLGIKEENEDMEKVEVGLHIGLPNVGDGKNLNVCVKKEEVSCLKKSFSNFNNQGRFWIPTQAQILVGPMQFTCSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHSPCSSLDDECLTGSDQEDHFT 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23131996 23135095 + ClCG01G012380.1 Cla01g01224 264813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01224 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Cla01g01224 339 MobiDBLite consensus disorder prediction 316 339 - -
Cla01g01224 339 Coils Coil 106 126 - -
Cla01g01224 339 SMART c2h2final6 230 262 IPR013087 -
Cla01g01224 339 SMART c2h2final6 267 287 IPR013087 -
Cla01g01224 339 SMART c2h2final6 183 205 IPR013087 -
Cla01g01224 339 SUPERFAMILY beta-beta-alpha zinc fingers 169 206 IPR036236 -
Cla01g01224 339 Gene3D Classic Zinc Finger 182 205 - -
Cla01g01224 339 PANTHER ZINC FINGER PROTEIN WIP2 10 335 IPR043584 GO:0003700|GO:0010468
Cla01g01224 339 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Cla01g01224 339 Gene3D Classic Zinc Finger 263 322 - -
Cla01g01224 339 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 10 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01224 Cla-Chr1:23131996 Cla04g00085 Cla-Chr4:2589146 2.13E-102 dispersed
Cla01g01224 Cla-Chr1:23131996 Cla02g02261 Cla-Chr2:37716394 2.65E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60411 PF13912 zf-C2H2_6 5.70E-05 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01224 - - bhj:120082596 610.912