Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01243 ATGGGCATCATAGACGGTGGCACTCAAACGCAGTCTGCAAATCCGAACATGGGAAGAGAAAAGCCGAAGGTGGTGGTTATTATGGGGCCGACCGGTTCTGGGAAGTCCCGTCTCGCCATCGATTTGGCTTCTCACTTCCCCGTCGAGATCATCAACGCCGACTCTATGCAGGTTTATCGAGGGTTGGACGTTCTCTCTAACAAAGTTCCCCCCGAAGACCAAAATGGAGTACCGCATCATCTTTTAGGTACAGTGAGTCCAGACGTTGAATTCACGGCTAAAGAATTCCGAGATTCTGCCGTTTCTGTGATTGATGACATAATTTCTCGTGGATGCTTGCCAATGATAGTGGGTGGAACAAATTATTATATACAGGCTCTTGTTAGCCCGTTTCTTCTGGATGATTCTGCCGAAAATGTTGGTGGAAGTTGCTCCATTTATCCTGGAGATGAAGAGCTGGGTATTGAGTTGAATGAGGGAAGAGATGGTTTGAAGTATGACCATAACCATCTTAAAGAGATTGATCCAGTTTCAGCTAACAGAATCCATCCTAATAACCACAGAAAAATAAATCAATACCTGAGTTTGTATTACCGCACTGGTGTTCTTCCCAGCACACTTTTTCAAGGAACGGCTAATGAGAATTGGGGTCAAGCTGATAGTTTCAGATATGATTGCTGCTTGATATGTGTCGATGCTTCTGTTCCACAACTTGATGGACATGTTGATTCTAGAGTTGATAGCATGATGGCTGCTGGATTACTTGATGAGGTTTATGACATTTACAATCCAAATGCAAACTATACTAAAGGAGTGCGTCAAGCTATTGGTGTTCGGGAGTTTGAAGAGTTTTTGAGATATTATGTACCTAAAGGTAGATGTGAAAAAGATAGTGCTGGTCTTAGCCCAAAAAAAATAATGGAGTGCAACGAGATTGAGAATATAAGGTCAATCCTGAATTCACCAAGTAATAGCCAACCCAGTTTGCTACTGAAAGAAGCCATAGATAATGTAAAGTTGAATACTAGAAGACTGGTTCGTCGTCAGAGGAGGCAGCTAAAGAGACTGGAGACTTTGTTTGGATGGAAGATCCACTATGTTGATTCCACGGAATATATAACATGCAAAGTGGAGGATTCATGGACTGCACAAGTCGTTGAACCTGCAGTCCAGATAATTAGGTCTTTCCTTAAAGATGGTTCGGGGACTGAAACAATAAACCCGCATAGTTCAGGGCAAACAATCAAGAAGGACGTGTGGACACAATATATATGCCAGGCTTGTGGGAATAAAGTACTAAGAGGAGCACATGAGTGGGAACAACACAATCAAGGTCGCACACATCGAAAACGAATTTATCGGCTTAAGAAGAAGGCCTTCCTTGCTGCAACAGAAACTACCTCTTCAAGAATAACTCTTCTGGCCTGCAATTTTGGTACTAAAGCATTAAGTTTAGAAGGAAATAATTTTCAGTGTATTACAAAAATTGAAAATTAA 1497 41.82 MGIIDGGTQTQSANPNMGREKPKVVVIMGPTGSGKSRLAIDLASHFPVEIINADSMQVYRGLDVLSNKVPPEDQNGVPHHLLGTVSPDVEFTAKEFRDSAVSVIDDIISRGCLPMIVGGTNYYIQALVSPFLLDDSAENVGGSCSIYPGDEELGIELNEGRDGLKYDHNHLKEIDPVSANRIHPNNHRKINQYLSLYYRTGVLPSTLFQGTANENWGQADSFRYDCCLICVDASVPQLDGHVDSRVDSMMAAGLLDEVYDIYNPNANYTKGVRQAIGVREFEEFLRYYVPKGRCEKDSAGLSPKKIMECNEIENIRSILNSPSNSQPSLLLKEAIDNVKLNTRRLVRRQRRQLKRLETLFGWKIHYVDSTEYITCKVEDSWTAQVVEPAVQIIRSFLKDGSGTETINPHSSGQTIKKDVWTQYICQACGNKVLRGAHEWEQHNQGRTHRKRIYRLKKKAFLAATETTSSRITLLACNFGTKALSLEGNNFQCITKIEN 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24960605 24979973 + ClCG01G012600.1 Cla01g01243 264832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01243 498 SUPERFAMILY beta-beta-alpha zinc fingers 413 457 IPR036236 -
Cla01g01243 498 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 400 IPR039657 -
Cla01g01243 498 Gene3D - 22 421 IPR027417 -
Cla01g01243 498 TIGRFAM miaA: tRNA dimethylallyltransferase 24 286 IPR018022 GO:0008033
Cla01g01243 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 130 IPR027417 -
Cla01g01243 498 Gene3D Classic Zinc Finger 422 462 - -
Cla01g01243 498 Pfam IPP transferase 57 354 - -
Cla01g01243 498 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 400 - -
Cla01g01243 498 Hamap tRNA dimethylallyltransferase [miaA]. 24 398 IPR018022 GO:0008033
Cla01g01243 498 Gene3D - 151 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01243 Cla-Chr1:24960605 Cla05g00583 Cla-Chr5:5341795 1.05E-22 dispersed
Cla01g01243 Cla-Chr1:24960605 Cla06g00544 Cla-Chr6:6572407 1.11E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01243 K00791 - csv:101202758 808.905