Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01291 ATGGCCAAGCCTGGGAATAATGCTGAAACTTCTTCTTCTTCTTCTTTGAAATTAGATCGCAAAACTATCGAGAAAAATAGAAGAATTCTTATGAAATCTCTCTGTTCTAAGCTTTTTAATCTTGTTCCTCCTTCCCATTTCAAAATCTCTAAGGAGTTGTTGTCGCAACAAAATCAAATCTCTTATGTAATTGCTTACATAAATGAATTGAAAGAAAGAGTGGAGAATTTGGGGAAAAGGAAACAAGCTTTACAATTACGAAACCATTCTCATAATCATAACAATCATCAAGCAGCCGATGATCTTGATAGGGTTGCCAAAAGGATGATAGTTAATAATGATGATCTTACTCTTACATTGCCAGTGGTTGAGTTAAGAGATTTAGACAATGGCATTGTTCACATATTGCTAATTAGTAGCCTCAATAGAACCTTCATGCTCCACCAAATTATTGGTGTCGTCGAAGAGGAAGGCGGCGAGGTCGTCAACGCTAGCTTGTCCACAATTGGCAACAAAGTCTTTTACTCTCTCCACATTGAAGCAAAAATTTCGAGAGTTGGAATAGAGACTTCGAGAATTCAACAAAGATTGTTGAACTTAGTATCCCGAAATTAA 615 36.42 MAKPGNNAETSSSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQISYVIAYINELKERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTLPVVELRDLDNGIVHILLISSLNRTFMLHQIIGVVEEEGGEVVNASLSTIGNKVFYSLHIEAKISRVGIETSRIQQRLLNLVSRN 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26185703 26186541 - ClCG01G013070.2 Cla01g01291 264880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01291 204 Coils Coil 67 87 - -
Cla01g01291 204 PANTHER OS01G0108400 PROTEIN 14 200 - -
Cla01g01291 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 92 IPR036638 GO:0046983
Cla01g01291 204 Gene3D - 15 101 IPR036638 GO:0046983
Cla01g01291 204 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 14 200 IPR015660 GO:0003700|GO:0006357
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01291 - - - cmo:103483440 241.891
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01291 Cla-Chr1:26185703 Cla02g01735 Cla-Chr2:32238945 3.14E-15 dispersed
Cla01g01291 Cla-Chr1:26185703 Cla07g00264 Cla-Chr7:2925123 7.66E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g729 . . . . . Bpe13g00224 Bma06g00229 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0110 . . Lsi02g00364 Csa01g00841 Chy12g01276 Cme12g01703 . . Bda11g01637 . . . . . Sed08g2498 . . . Cma18g00161 . Car18g00154 . . Bhi08g01595 Tan05g2021 Cmetu12g1885 Lac10g0437 Hepe07g2234 . . Cla01g01291 Cam01g1438 Cec01g1473 Cco01g1453 Clacu01g1358 Cmu01g1261 Cre01g1272 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010270 3 1 0 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01291 Cla_Chr01 FPKM 6.657488 8.299678 4.465362 3.152269 13.634906 14.843406 11.383023 1.103015 1.180992 1.024194