Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01293 ATGTACGCGTCGTCCTCCGTTTCGATCGCAGCCCTTCCTTGCCCACGCTTGCTTCAGCCTCCATTGAAGCCCTCCGCGTGCTTTCAAACTTCTTTCAACCGCCGCCATCTGATTACCACTCTGCTCTCTGTCTTTACCCCTTCTTTTATCGAATTTACTCTGCCCTGTTCTTCTGATTTGGTTGCTGAAGCTCGTGGTCTGTTTCAAATGCCCCCTCTTCGTCTCGTCAATCGGTACTTTCTGGTGAGGGCAGGGGAGTCTGAATTTGATAGTTTTGGAATAATTAACACAAACCCAGTTGCAAAGACATCTGTTGATAGTGGATTATCTGAGGAAGGGAAGAAGCAAACTGTTAAAGCAGCTTTTAAGTTGAAGGAAATGGGAGCCTGTGAAAATGGTTGCTGGATTTGGCCCTCTATTACACAGAGGGCTTATCAAGCAGCAGAGATTATTGCATCAGTTAATGGTGTGAATCGAAGTTATATAGTTCCTGAATACAGTTTTCTTGATGCCCGTGGACTTGGAGCTTATGAAGGCAAGAGATTGGATTCTGTGTCAGAAGTATATGCTTCAGATACCATCTCTTCAAGTATCAAACCTCCTCCAATAGATGATGGCACCCCAAACGAGAGCGTATCTGATGTCTTTGTTCGCGTAACACAACTGATGTCGATTCTCGAAACCCAATACTCTGGTGATACTATCATTATTGTCTCACCAGATTCTGATAATTTGACAGTTCTTCAAGCTGGTTTAATTGGCCTCGACTTGCGAAGGCACCACGATCTTTTCTTTGCTCCCGGGGAGGTTCGCTTCGTTGATATACGCAGCATCCCTTCCTATAAGCAACCAGCTTCAGCTTTTTTGGATATGGCTATTCGAGGAGTCGATTTCAAATGGTACGATGGGTTCTTCTTGTCGATGCTTGCTACTAGTATAATAATTGTGACCATCAATTGGAGAAGGTACAATACTTGTACGTATCCTTTGCACATATGGATTGTGGTTGATTATACTTCTGTGTTTGCATTTCGCCTTTTGCTGTTCATCGATAATGCACTTTCAGCTGGAATGGGATTAGATTTTGGATGGCAGCAGCGATATGCTCGGTTTTGTGGAAGAGTTGTGGTTCTTTCTATTCTCTCTCTATTGCTCTACCCCTTTCTATGTGCCTGGACTGTAATTGGCACCCTGTGGTTTAGAGATGCTAAAGATTGTTTGCCTGAAGAAGGACAGAAATGGGGTTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTTGGAAAGCGCGTAGGCAAGCGCACTTGTTCCGTGCCCAACAAGGCATACCAGTATCAGAATATGGGAGTTCCTGATTGGGCATATGAAGCTGCAGGACTGGAAACACGAGGCATAGGCCAAGATGCTACTGGGTACCATCCCGGGCTGTTCTTAACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTCAGGCTGAAGGCTGTCCCAACTGATTGCAGTGAATGCCCTATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGTGGCTTCGTCTGAATGTTAAATGTCCTCGATGCCGCTCCTCTGTCTTCCCAAATCTCGACCTCAGCGCTCTTTCTAACCTGCATTCAGACACAGAACAAACATCTGACAATGCTTTTGTAACAACCCAACCTTCAAGTCTACCAAGATCGACTCCAACCCGTGCAGCTCATACCGAAAACACAACAGACCTCTATACTGACACTGCCTTAGAAGCTGTGGAGAATGGAAACTCACCTCTGCCATCTGCTTCTCCACATTGA 1845 45.69 MYASSSVSIAALPCPRLLQPPLKPSACFQTSFNRRHLITTLLSVFTPSFIEFTLPCSSDLVAEARGLFQMPPLRLVNRYFLVRAGESEFDSFGIINTNPVAKTSVDSGLSEEGKKQTVKAAFKLKEMGACENGCWIWPSITQRAYQAAEIIASVNGVNRSYIVPEYSFLDARGLGAYEGKRLDSVSEVYASDTISSSIKPPPIDDGTPNESVSDVFVRVTQLMSILETQYSGDTIIIVSPDSDNLTVLQAGLIGLDLRRHHDLFFAPGEVRFVDIRSIPSYKQPASAFLDMAIRGVDFKWYDGFFLSMLATSIIIVTINWRRYNTCTYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKRVGKRTCSVPNKAYQYQNMGVPDWAYEAAGLETRGIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSDNAFVTTQPSSLPRSTPTRAAHTENTTDLYTDTALEAVENGNSPLPSASPH 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26231130 26239892 + ClCG01G013080.1 Cla01g01293 264882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01293 614 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 291 574 - -
Cla01g01293 614 MobiDBLite consensus disorder prediction 561 588 - -
Cla01g01293 614 SUPERFAMILY Phosphoglycerate mutase-like 78 275 IPR029033 -
Cla01g01293 614 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 291 574 IPR044793 GO:0004842|GO:0010182
Cla01g01293 614 Pfam Histidine phosphatase superfamily (branch 1) 80 273 IPR013078 -
Cla01g01293 614 SUPERFAMILY RING/U-box 498 548 - -
Cla01g01293 614 Gene3D - 77 284 IPR029033 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01293 Cla06g01657 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01293 Cla-Chr1:26231130 Cla06g01657 Cla-Chr6:30084390 1.27E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01293 K16284 - csv:101222360 580.482