Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01294 ATGAGGAATTTAAACTGGTTTAAGCCAATTTCGATTAATGGGAAGCCTGGGAGGAGGCTTTCACTAGGAGAATACCAGCGTGCTGTGTCGTGGTCTAAGTATTTGGTGTCTTCAGGAGCAGAGATAAAGGGAGAGGGAGAAGAGGAATGGAGTGCTGACATGTCCCAGTTGTTCATTGGCTTCAAATTTGCTACTGGAAGGCACAGTAGGATTTACAGAGGTGTGTATAAACAGAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAGGATGAAAATTTGGCTAACTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGATTGAGACATCCCAATATCATCACTTTCATTGCAGCTTGCAAGAAACCTCCAGTGTTTTGTATTATCACGGAGTATATGACAGGAGGTTCGTTAAGAAAATATCTCCATCAACAAGAGCCACATTCCGTTCCGCTGAACTTGGTTCTGAAACTAGCCCTCGAAATCTCACGTGGGATGCAGTACCTTCATTCTCAGGGAATACTCCACAGAGATCTCAAATCAGAAAATCTCTTACTCGGTGAAGATATGTGTGTTAAGGTAGCAGATTTCGGTATCTCATGCTTAGAATCTCAATGTGGAAGTGCGAAGGGATTCACCGGAACTTACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACACCACACTAAGAAAGTTGATGTTTATAGCTTTGGCATTGTCTTATGGGAGCTCTTAACTGCATTGACACCATTTGATAACATGACTCCTGAACAGGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCACCGCTGCCTTCTGCTTGCCCGCAGGCATTTCGTCATCTGATCAAGAGATGCTGGTCGAGAAATCCCAACAAGCGACCGCACTTTGATGAGATCGTTTCAATCTTGGAAACTTATGCGGAGTGTTACAATGAAGATCCAGATTTTTTTGGTCATTACGTCCCCTCGTCTAGATATACTGCTTTGCAATGCTTACCAAAATCATCTTATCTTGCTTCAAGCCTTAGGATTTGGCCACACCCCATGAGGAATTTAAACTGGTTTAAGCCAATTTCGATTAATGGGAAGCCTGGGAGGAGGCTTTCACTAGGAGAATACCAGCGTGCTGTGTCGTGGTCTAAGTATTTGGTGTCTTCAGGAGCAGAGATAAAGGGAGAGGGAGAAGAGGAATGGAGTGCTGACATGTCCCAGTTGTTCATTGGCTTCAAATTTGCTACTGGAAGGCACAGTAGGATTTACAGAGGTGTGTATAAACAGAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAGGATGAAAATTTGGCTAACTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGATTGAGACATCCCAATATCATCACTTTCATTGCAGCTTGCAAGAAACCTCCAGTGTTTTGTATTATCACGGAGTATATGACAGGAGGTTCGTTAAGAAAATATCTCCATCAACAAGAGCCACATTCCGTTCCGCTGAACTTGGTTCTGAAACTAGCCCTCGAAATCTCACGTGGGATGCAGTACCTTCATTCTCAGGGAATACTCCACAGAGATCTCAAATCAGAAAATCTCTTACTCGGTGAAGATATGTGTGTTAAGGTAGCAGATTTCGGTATCTCATGCTTAGAATCTCAATGTGGAAGTGCGAAGGGATTCACCGGAACTTACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACACCACACTAAGAAAGTTGATGTTTATAGCTTTGGCATTGTCTTATGGGAGCTCTTAACTGCATTGACACCATTTGATAACATGACTCCTGAACAGGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCACCGCTGCCTTCTGCTTGCCCGCAGGCATTTCGTCATCTGATCAAGAGATGCTGGTCGAGAAATCCCAACAAGCGACCGCACTTTGATGAGATCGTTTCAATCTTGGAAACTTATGCGGAGTGTTACAATGAAGATCCAGATTTTTTTGGTCATTACGTCCCCTCGTCTAGATATACTGCTTTGCAATGCTTACCAAAATGTATTACCAAACAATTATCTGCTTCCTTGAAACCTAGGAATTCTTCCTCATCTTGA 2151 43.42 MRNLNWFKPISINGKPGRRLSLGEYQRAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMTGGSLRKYLHQQEPHSVPLNLVLKLALEISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPQAFRHLIKRCWSRNPNKRPHFDEIVSILETYAECYNEDPDFFGHYVPSSRYTALQCLPKSSYLASSLRIWPHPMRNLNWFKPISINGKPGRRLSLGEYQRAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMTGGSLRKYLHQQEPHSVPLNLVLKLALEISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPQAFRHLIKRCWSRNPNKRPHFDEIVSILETYAECYNEDPDFFGHYVPSSRYTALQCLPKCITKQLSASLKPRNSSSS 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26249281 26254959 + ClCG01G013090.1 Cla01g01294 264883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01294 716 Gene3D Transferase(Phosphotransferase) domain 1 140 324 - -
Cla01g01294 716 Gene3D Transferase(Phosphotransferase) domain 1 496 680 - -
Cla01g01294 716 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01294 716 SMART serkin_6 413 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01294 716 SUPERFAMILY Protein kinase-like (PK-like) 403 667 IPR011009 -
Cla01g01294 716 CDD STKc_MAP3K-like 422 667 - -
Cla01g01294 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
Cla01g01294 716 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
Cla01g01294 716 CDD STKc_MAP3K-like 66 311 - -
Cla01g01294 716 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Cla01g01294 716 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Cla01g01294 716 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Cla01g01294 716 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Cla01g01294 716 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Cla01g01294 716 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 357 689 - -
Cla01g01294 716 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 333 - -
Cla01g01294 716 PANTHER SERINE-THREONINE PROTEIN KINASE 357 689 - -
Cla01g01294 716 PANTHER SERINE-THREONINE PROTEIN KINASE 1 333 - -
Cla01g01294 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Cla01g01294 716 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01294 716 ProSiteProfiles Protein kinase domain profile. 413 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01294 716 Pfam Protein tyrosine and serine/threonine kinase 62 311 IPR001245 GO:0004672|GO:0006468
Cla01g01294 716 Pfam Protein tyrosine and serine/threonine kinase 418 667 IPR001245 GO:0004672|GO:0006468
Cla01g01294 716 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
Cla01g01294 716 Gene3D Phosphorylase Kinase; domain 1 403 495 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01294 Cla-Chr1:26249281 Cla01g02251 Cla-Chr1:36458051 7.41E-107 dispersed
Cla01g00200 Cla-Chr1:1988980 Cla01g01294 Cla-Chr1:26249281 1.87E-25 transposed
Cla01g02105 Cla-Chr1:35335976 Cla01g01294 Cla-Chr1:26249281 9.87E-135 transposed
Cla02g00400 Cla-Chr2:3896275 Cla01g01294 Cla-Chr1:26249281 1.21E-43 transposed
Cla02g01888 Cla-Chr2:34064488 Cla01g01294 Cla-Chr1:26249281 1.03E-31 transposed
Cla05g00127 Cla-Chr5:1208568 Cla01g01294 Cla-Chr1:26249281 8.18E-27 transposed
Cla05g01594 Cla-Chr5:27021993 Cla01g01294 Cla-Chr1:26249281 6.01E-78 transposed
Cla08g00702 Cla-Chr8:19267285 Cla01g01294 Cla-Chr1:26249281 2.30E-58 transposed
Cla10g00044 Cla-Chr10:506616 Cla01g01294 Cla-Chr1:26249281 1.42E-55 transposed
Cla10g01559 Cla-Chr10:30987786 Cla01g01294 Cla-Chr1:26249281 1.31E-38 transposed
Cla11g01089 Cla-Chr11:22239628 Cla01g01294 Cla-Chr1:26249281 1.78E-90 transposed
Cla01g01294 Cla-Chr1:26249281 Cla10g01357 Cla-Chr10:28613891 7.30E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80258 PF07714 PK_Tyr_Ser-Thr 4.10E-65 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01294 - - csv:101222762 711.835