Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01303 ATGCAGAGCTCTGCGGTCACCTTCTCGCCTTCTCTTCCTCTTCTCAAGCCTCGCAGGCCTCATACTTCATCCTTCAGCTCTGGATGTAACTCAATTCGGTTATCTTCTTCGTCATCCTCAAATTCCAGAGATCTCGGAGACCTGAACAATGTTGGCCTCCCTTCCTCTTGGCCCCGCCGATCTTGGACTCTGTCTTCGTCTCCTTTTTCCTCCTCGAAACTCCGCCCATGGACCGGTGTGCCCTCGCTTGCTTCGGATTCCGATGCGAGTCATTTTAAGGTTCAGGCTACTGCGGTGCCGGATAGCTCAGGGGAGGCCGCGAGTGCTGGCGGAAGCCTAATGAAAACGTTGGAGCTCGGGTTGTTGTTTGGCCTCTGGTACCTTTTCAACATCTACTTTAACATCTACAACAAGCAGGTTCTCAAGGTGTATCCGTTTCCTGTGACTGTCACTGCAGTTCAATTTGCCGTAGGCACTGTACTTGTTCTTCTCATGTGGGGACTTAATCTCTACAAAAGACCTAAGATTAGTGGTGCTCAGCTTGCTGCTATTCTGCCACTGGCATTTGTTCACACATTGGGAAATCTTTTCACAAATATGAGTCTTGGGAAAGTGGCGGTATCGTTCACTCACACAATCAAAGCCATGGAGCCATTTTTTTCAGTTGTCCTGTCAGCAATGTTTCTTGGAGAGAAAAATGCTGGTGTTGTTGTATCTCTTAAGGCCATTGTTGGTGGTGTTTTAATTCTGACATTTGTATTTATGTCTTTGAAGACTCCTACTCCCTGGGTTGTTGCGTCCCTTCTGCCAATCGTAGGTGGTGTTGCATTGGCATCTGCCACTGAGGCCTCCTTCAACTGGGCTGGGTTTTGGAGCGCAATGGCATCCAATGTGACTAATCAATCTCGTAATGTCCTTAGCAAAAAGGTCATGGTGAAAAAAGAGGTAACGACTACAGATGTATATTTCCGATTACCTTTGTTGCTTCTGTTAGCAGTTGACTCAATTGACAACATCACCCTCTTTTCAATTATAACAGTCATGTCCTTTTTCTTACTATCCCCTGTGGCCATCTTCATGGAAGGTGTCAAGTTCACTCCTGCATACCTTCAATCAGCTGGATTGAACATGAATCAACTATACATTAGGTCTCTTCTTGCTGCCCTTTGTTTCCATGCTTACCAACAGGTTTCTTACATGATATTGCAAAGAGTATCGCCTGTTACCCACTCGGTCGGCAATTGTGTAAAGCGTGTTGTGGTCATCGTGAGCTCTGTTATCTTCTTCCAAACACCTGTTTCTCCAATCAACTCTCTTGGCACTGGAATAGCTCTTGCTGGGGTTTTCCTTTATTCGAGGGTTAAGCGCATCAAAGCTAAGCCGAAGACAGCTTAA 1395 46.16 MQSSAVTFSPSLPLLKPRRPHTSSFSSGCNSIRLSSSSSSNSRDLGDLNNVGLPSSWPRRSWTLSSSPFSSSKLRPWTGVPSLASDSDASHFKVQATAVPDSSGEAASAGGSLMKTLELGLLFGLWYLFNIYFNIYNKQVLKVYPFPVTVTAVQFAVGTVLVLLMWGLNLYKRPKISGAQLAAILPLAFVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVVLSAMFLGEKNAGVVVSLKAIVGGVLILTFVFMSLKTPTPWVVASLLPIVGGVALASATEASFNWAGFWSAMASNVTNQSRNVLSKKVMVKKEVTTTDVYFRLPLLLLLAVDSIDNITLFSIITVMSFFLLSPVAIFMEGVKFTPAYLQSAGLNMNQLYIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSLGTGIALAGVFLYSRVKRIKAKPKTA 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26380826 26384610 - ClCG01G013200.2 Cla01g01303 264892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01303 464 SUPERFAMILY Multidrug resistance efflux transporter EmrE 376 455 - -
Cla01g01303 464 MobiDBLite consensus disorder prediction 20 47 - -
Cla01g01303 464 MobiDBLite consensus disorder prediction 1 47 - -
Cla01g01303 464 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 58 248 - -
Cla01g01303 464 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 260 439 - -
Cla01g01303 464 PANTHER SOLUTE CARRIER FAMILY 35 58 248 - -
Cla01g01303 464 PANTHER SOLUTE CARRIER FAMILY 35 260 439 - -
Cla01g01303 464 SUPERFAMILY Multidrug resistance efflux transporter EmrE 162 250 - -
Cla01g01303 464 Pfam Triose-phosphate Transporter family 249 452 IPR004853 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01303 Cla-Chr1:26380826 Cla05g00261 Cla-Chr5:2381406 1.00E-63 dispersed
Cla01g01303 Cla-Chr1:26380826 Cla09g01867 Cla-Chr9:36382530 4.81E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01303 K15283 - csv:101203848 681.789