Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01307 ATGTCAACAACATCTCTCCTAATTCCTCTCATCCTCTCATTTCTTCCACTCTTCACTTCCACCACCAATATCCACTCCGACGCCTGCCGCTCCTTCTGCGGCAACATCACCGTCGACTATCCCTTCTCTCTCCAATACGGTTGCGGCCATCCCGGTTACCGCGACCTTCTCTACTGTATGAACGATGTTCTAATGTTCCACATCCGATCCGGATCTTACAGAGTGTTAGACATCGATTACGCTTACGAAGCCCTAACTCTCCACGATCCTCACATGTCCACCTGCGATACCATCGTCCTCGGCGGTCGAGGCAATGGCTTCGACATCGAGGAGTGGCGGTCGCCGTACCTGAATCCAACTGCCGATAACGCCTTTCTCCTCATCGGCTGCTCCGCCCAATCGCCGCTCTTCCAAGGGTTCCCGAACAAGCATCTGGTCTGCAGAAACATTTCGGGAATGGGTTGCGAGGAATACTACGACTGTCCGGCTTGGGATTTATTGGGCCGCAGAAGACCGGGCCGGGTTTATGGGTCCGGTCCACCGGAGTGCTGTGCGGTTCCGTTTGGGTCAATTAAGGCTATAAATCTCACGAAGCTTCAATGTGAAGGATATAGTAGTGCCTATAATTTGGCCCCGTTGAGGATTAATGGGCCTGATGAGTGGGCCTATGGGATTCGTGTGAAATATTCGGTCCAAGCAAATCAAGACTTTTGTCGAGCGTGCCAAGCTACTGGTGGCACGTGCGGGTACGGTACGGATAGTGTTAGACAGCTGTGTATGTGTGGGACCTCCAATTCTACCTCCACTTGTGATTTTGTTATGAGCTCCTCACCAAGGAGGAGGACACTGTGGACAATAATCAAAGCCCTATTAGCAGGAAGCTGGATGCTGATGTTGTAG 900 51.78 MSTTSLLIPLILSFLPLFTSTTNIHSDACRSFCGNITVDYPFSLQYGCGHPGYRDLLYCMNDVLMFHIRSGSYRVLDIDYAYEALTLHDPHMSTCDTIVLGGRGNGFDIEEWRSPYLNPTADNAFLLIGCSAQSPLFQGFPNKHLVCRNISGMGCEEYYDCPAWDLLGRRRPGRVYGSGPPECCAVPFGSIKAINLTKLQCEGYSSAYNLAPLRINGPDEWAYGIRVKYSVQANQDFCRACQATGGTCGYGTDSVRQLCMCGTSNSTSTCDFVMSSSPRRRTLWTIIKALLAGSWMLML 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26414987 26419684 + ClCG01G013240.2 Cla01g01307 264896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01307 299 Pfam Wall-associated receptor kinase galacturonan-binding 29 89 IPR025287 GO:0030247
Cla01g01307 299 PANTHER WALL-ASSOCIATED RECEPTOR KINASE GALACTURONAN-BINDING PROTEIN 14 291 - -
Cla01g01307 299 PANTHER WALL-ASSOCIATED RECEPTOR KINASE CARBOXY-TERMINAL PROTEIN-RELATED 14 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01307 - - - csv:101203279 572.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01307 Cla-Chr1:26414987 Cla05g00730 Cla-Chr5:6923118 8.36E-40 dispersed
Cla01g01307 Cla-Chr1:26414987 Cla03g00424 Cla-Chr3:4859390 5.12E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g769 . . . Bda15g00552 . . . . Cmo13g00911 Cmo18g00135 . . . . . . . . . . . . . . . . . . . . . Cone2ag0914 Cone16ag0094 . . . Csa01g00860 Chy12g01261 Cme12g01686 . . . . . . . Bma08g00097 Sed08g2520 . . Cma13g00880 Cma18g00177 Car13g00721 Car18g00167 Cpe09g01019 . Bhi08g01623 Tan05g1996 Cmetu12g1069 Lac10g0458 Hepe07g2219 . . Cla01g01307 Cam01g1423 Cec01g1457 Cco01g1466 Clacu01g1372 Cmu01g1280 Cre01g1259 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011599 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01307 Cla_Chr01 FPKM 16.684782 17.488115 18.559086 19.248278 16.105679 16.895632 17.634634 21.368916 23.56563 25.609957