Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01308 ATGGCGCTTTCTTCTCGCCTATCTCCGATTTCGTTGCCTTCTTCTTTCACTTCCCATTCTGAAGTAGCTTCTCTGTGTTTTACTACCTTCGATTGTCTAAGTCCTCAAAAAAGACGAGGCTCTAGCAAGTTCCGGGGTTTGAATTTCCACCTTCCGCCTTCGATTTCGGCTTCGAGAACGGTGGCCGCCGGTGCGGTGTCACCGTCAGCAGTTGCAAATTCGAGCGGGCCAGTTACTTCATTCAGTAATTTGATTGAATCTCTGATTAATCGCGTGGATTTGTCGGAGGATGAAGCGGAGGCGTCTCTTCAGTATCTTCTTAACGATGCCAGTGAGGCATCAATTAGTGCTTTCCTTGTGTTACTCAGAGCCAAAGGAGAGACCTATGAAGAAATTGTGGGACTTGCGAGGGCGATGATCAAGCATAGTGTGAAGGTGGATGGCTTATTTGATGCCATTGACATTGTTGGAACAGGTGGTGATGGAGCAAACACAGTAAACATCTCAACTGGTGCTTCAATACTTGCTGCAGCATGTGGCACAAGGGTTGCGAAGCAAGGAAACCGTTCGAGTTCTTCGGCATGTGGAAGTGCTGATGTCTTGGAGGCATTGGGGGTAGTTATTGATTTGGGACCTGAGGGAGTTGCCAAATGTGTTGATGAAGTTGGAATTGGCTTCATGATGGCTCCCAAATACCATGCTGCAATGAAGATTGTCAGTCCTGTCAGGAAGAAGCTAAAAGTAAAAACTGCATTTAACATACTGGGCCCTATGCTTAATCCGGCTAGAGTCCCCTTCGCTGTTGTTGGTGTATATTCTGAGAACTTGGTCTCCACAATGGCTAAAGCACTGCAACTATTTGGCATGAAAAGATCATTAGTAGTTCACTCTGAGGGTTTGGATGAGATGAGTCCTCTTGGACCGGGATTTATTCTTGATGTAACGCCCGAAAAGATTGAAAAGTTTGCATTTGATCCATTGGATTTTGGCATTCCCCGCTGCACCATAGATGACCTTCGAGGTGGAGGCTCCGATTATAACGCAGAGGTGTTGAAGCGCGTGTTATCCGGAGAAAAGGGGCATATTGCAAATGCACTCATCCTGAATGCTGCTGCTGCCCTTCTGGTTAGCTGCAAAGTAACCACCTTGGCCGAGGGAATCGAGTTGGCTCGGGAAACTCAAGAGTCTGGAAAAGCCATGAAGACCCTTGATTTGTGGATAGAACTCTCCAATAAGCTAAAAGAAGTATATGCTTAG 1257 46.54 MALSSRLSPISLPSSFTSHSEVASLCFTTFDCLSPQKRRGSSKFRGLNFHLPPSISASRTVAAGAVSPSAVANSSGPVTSFSNLIESLINRVDLSEDEAEASLQYLLNDASEASISAFLVLLRAKGETYEEIVGLARAMIKHSVKVDGLFDAIDIVGTGGDGANTVNISTGASILAAACGTRVAKQGNRSSSSACGSADVLEALGVVIDLGPEGVAKCVDEVGIGFMMAPKYHAAMKIVSPVRKKLKVKTAFNILGPMLNPARVPFAVVGVYSENLVSTMAKALQLFGMKRSLVVHSEGLDEMSPLGPGFILDVTPEKIEKFAFDPLDFGIPRCTIDDLRGGGSDYNAEVLKRVLSGEKGHIANALILNAAAALLVSCKVTTLAEGIELARETQESGKAMKTLDLWIELSNKLKEVYA 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26425771 26429588 + ClCG01G013250.1 Cla01g01308 264897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01308 418 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 81 147 IPR036320 -
Cla01g01308 418 Hamap Anthranilate phosphoribosyltransferase [trpD]. 83 409 IPR005940 GO:0000162|GO:0004048
Cla01g01308 418 Gene3D Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 83 146 - -
Cla01g01308 418 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE, CHLOROPLASTIC-LIKE ISOFORM X1 56 415 - -
Cla01g01308 418 Pfam Glycosyl transferase family, a/b domain 151 399 IPR000312 GO:0016757
Cla01g01308 418 Gene3D Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 149 418 IPR035902 -
Cla01g01308 418 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 152 415 IPR035902 -
Cla01g01308 418 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE 56 415 IPR005940 GO:0000162|GO:0004048
Cla01g01308 418 Pfam Glycosyl transferase family, helical bundle domain 84 143 IPR017459 -
Cla01g01308 418 TIGRFAM trpD: anthranilate phosphoribosyltransferase 85 408 IPR005940 GO:0000162|GO:0004048
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01308 K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] - csv:101204330 691.419
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g770 . . . . . . . . . . . . . . . Cpe20g00249 . . . . . . . . . . . . . . . Cone2ag0915 Cone16ag0093 . . Lsi02g00381 Csa01g00861 Chy12g01260 Cme12g01685 . . . . . . . . Sed08g2521 . . . . Car13g00720 . . . Bhi08g01624 Tan05g1995 Cmetu12g2030 Lac10g0459 Hepe07g2218 . . Cla01g01308 Cam01g1422 Cec01g1456 Cco01g1468 Clacu01g1373 Cmu01g1281 Cre01g1258 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009653 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01308 Cla_Chr01 FPKM 17.844442 18.418835 12.883633 13.214305 10.017999 9.872599 10.090914 9.399023 8.124692 10.20658