Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01314 ATGTCATCAACAATAAGGGAAACTTCGAGATTAGCTGAGGCCTCAATCAACAGTATGGTCCGACGGATGGTTAATCTTCCAAGAAACATATTAGGAGGATTTTCAAGAGTTATGAATGGAGGAAGAAGAAACCAGACTCTGCCATCCAGTTACCAATATCAGATTCTGCAGCAGGACACACCAAATGTCCCGGAAGAATGGTCTTTCCTCACCAGTTTCCAGTACCAGTATGGCTCGATGCACCCTTTTTTTTACGCATGTCGATTCCCAGAAGCCATGAAGATAGCAGAAGATGAACACAAGTTCTTATTCTTGTATCTGCACTCACCAGATCACCCATTCACACCCTCTTTCTGTGGGGAGACACTGTGCTCAGAGCTAGTAGTGCAGTTTCTTGATGCTAACTTCATCTGTTGGGGAGCAGTTGCAAACAGAGGAGATGGACTATATATGGCTACAACATTAGGAGCTACCAGTTTCCCTTTCTGTGCCGTAGTTGCTCCGGCTCCAGGGGAAAGCATAACAGTTCTACAACAGCTTGAAGGGCAAGTTTCTCCAGCTGAGCTGGTGGAGATTCTACAGAGGACAATTGAGGAGCAGGGATCAGCTTTTTGTAGCTCCAAACTACAGCGAGAAGAAAGGATAAGAGCAGATCGCAGGATAAGAGAAGAGCAAGACAGAGCATATCATGCCGCTCTTAAAGAAGATAAGGAAAGGGAAAGACTTAAAAATCTACCTCTGGTGTTACCGAAAAAAGAAAATGATGAGAGGCTCAAGCAGAATTCTCCAAATAAACAACAAAATAGAGCGAAAGAACCTACATTTACTCGTGAAAATCCAAAGAAGGATCCTGTAAGTAAAGGAAAAGATTCTCAGCCTAGTTCCCAGATACTAATAAGGTTTCCAAACGGAGAAAAGAGAGAGAAAAGCTTTTCAAGCATTGACAAGGTGAAATCAATTTATAGTTATATCAATTCGCTCGGCCTGCCAGGTACTCAAAACTATAGATTGATAGCAAACTTCCCAAGAAGAGTATATGGTATGGATGAGATGAATATGACTCTGAAAGATGCTGGCCTTCACCCAAGAGCAATAAAAGATTTGCCAAGGACGAACTACTGGTTTCCTCATGAAGAATTAGTGCCTGAAATTGAAGAATCCGACTTCGAAATCAGATTTTACAGAAAATCCACTTGGATGTCTGCTCCCGTTCAAGACCCATCTTTCGGAAAAGCTACGAGAAATGGTTTCCACAGACTGTTCCAGTACATACAAGGTGCCAATCTGAATTGGTCAAGAATTGCCATGACTGCTCCTGTCTTGACAAGCATTGTCCCTGGGGCTGGCCCTCTTCACTCCTCCTCTTATCTTGTTCAATTCTATCTGCCACTTAAGTTTCAAGCTTCACCCCCTCTTCCTCTTCCTGAACTGAAACTGAAGCCCTGTGGTTGGGAAGCTCACTGTGTTGCAGTTAGAAAATTCTCTGGATTTGCAAGGGATGATAAGGTCATAAAGGAGGCAGAGAAACTTGCCACCAGCTTGAGTAAGTTCCCTTTGGCGAATTCCACCTCTGAAGGGGGTTATGCATATGCCATTGCACAATACGACTCTCCCTTCCGGTTGATCGGACGAGTTAATGAAGTCTGGGTTGATGTCGATGCAGACGATTTGGATGGATGTAAATCCAGTGCCATTGCTGCATTTTGA 1707 43.59 MSSTIRETSRLAEASINSMVRRMVNLPRNILGGFSRVMNGGRRNQTLPSSYQYQILQQDTPNVPEEWSFLTSFQYQYGSMHPFFYACRFPEAMKIAEDEHKFLFLYLHSPDHPFTPSFCGETLCSELVVQFLDANFICWGAVANRGDGLYMATTLGATSFPFCAVVAPAPGESITVLQQLEGQVSPAELVEILQRTIEEQGSAFCSSKLQREERIRADRRIREEQDRAYHAALKEDKERERLKNLPLVLPKKENDERLKQNSPNKQQNRAKEPTFTRENPKKDPVSKGKDSQPSSQILIRFPNGEKREKSFSSIDKVKSIYSYINSLGLPGTQNYRLIANFPRRVYGMDEMNMTLKDAGLHPRAIKDLPRTNYWFPHEELVPEIEESDFEIRFYRKSTWMSAPVQDPSFGKATRNGFHRLFQYIQGANLNWSRIAMTAPVLTSIVPGAGPLHSSSYLVQFYLPLKFQASPPLPLPELKLKPCGWEAHCVAVRKFSGFARDDKVIKEAEKLATSLSKFPLANSTSEGGYAYAIAQYDSPFRLIGRVNEVWVDVDADDLDGCKSSAIAAF 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26471722 26479322 - ClCG01G013310.2 Cla01g01314 264903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01314 568 Gene3D Regulatory factor, effector binding domain 379 559 IPR011256 -
Cla01g01314 568 MobiDBLite consensus disorder prediction 271 288 - -
Cla01g01314 568 Gene3D - 293 365 - -
Cla01g01314 568 SUPERFAMILY Ubiquitin-like 288 364 IPR029071 -
Cla01g01314 568 Pfam UBX domain 292 364 IPR001012 GO:0005515
Cla01g01314 568 CDD UAS 89 199 - -
Cla01g01314 568 SMART 45neu3 68 194 IPR006577 -
Cla01g01314 568 Gene3D Glutaredoxin 61 205 - -
Cla01g01314 568 CDD UBX 297 365 - -
Cla01g01314 568 MobiDBLite consensus disorder prediction 242 302 - -
Cla01g01314 568 Pfam SOUL heme-binding protein 385 550 IPR006917 -
Cla01g01314 568 SUPERFAMILY Thioredoxin-like 61 201 IPR036249 -
Cla01g01314 568 ProSiteProfiles UBX domain profile. 290 368 IPR001012 GO:0005515
Cla01g01314 568 SUPERFAMILY Probable bacterial effector-binding domain 385 552 IPR011256 -
Cla01g01314 568 SMART ubx_3 287 366 IPR001012 GO:0005515
Cla01g01314 568 MobiDBLite consensus disorder prediction 242 262 - -
Cla01g01314 568 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 7 364 - -
Cla01g01314 568 PANTHER FAS-ASSOCIATED PROTEIN 7 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01314 K18726 FAF2, UBXD8; FAS-associated factor 2 - csv:101205471 630.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01314 Cla-Chr1:26471722 Cla10g00353 Cla-Chr10:4711889 2.17E-08 dispersed
Cla01g00157 Cla-Chr1:1594124 Cla01g01314 Cla-Chr1:26471722 3.71E-73 transposed
Cla07g00996 Cla-Chr7:26207535 Cla01g01314 Cla-Chr1:26471722 1.66E-30 transposed
Cla11g00091 Cla-Chr11:1200872 Cla01g01314 Cla-Chr1:26471722 8.81E-07 transposed
Cla01g01314 Cla-Chr1:26471722 Cla05g02569 Cla-Chr5:36934893 2.03E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g784 . . Bda06g00608 . . . . . Cmo13g00907 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00390 Csa01g00868 Chy12g01254 Cme12g01678 . . . . Bpe07g00849 . . . Sed01g1635 . . Cma13g00874 . Car13g00716 . . . Bhi08g01640 Tan05g1989 Cmetu12g1788 Lac10g0470 . . . Cla01g01314 . . Cco01g1476 Clacu01g1380 Cmu01g1290 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013011 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01314 Cla_Chr01 FPKM 13.76 15.128548 12.987785 9.805485 21.133341 20.116905 20.981577 17.766134 17.941389 17.865402