Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01316 ATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTGTTGTTTTCCTTCTGCTTTTTACTTCTTTCTCCTCTGTTTTCTCAACTTCCATTTCCCATCAAATCCCACCAAAAAACCAAACTCTTTTCCATCCAACCAAAGAGCTGAAGAAACTAAAACACATCAGATCTTATTTACGCAAAATCAACAAGCCTCCAATCAAGACAATTCGGAGTTCAGATGGTGATGTTATAGACTGTGTTCTTTCTCATCTTCAGCCTGCTTTTGACCATCCTGAGCTCAAAGGGCATACTCCAATATTGGAACCAGGTGAGAGGCCAAGAGGGAACAACTCTATGGAAGAAGTAGCAGAAAATTTGCAATTATGGTCAGCTTCAGGGGATTTTTGCCCAGAAGGAACAATTCCAATAAGAAGAACAACAGAAAAAGACATTTTCAGAGCAAGTTCTTTTCGAAGATTTGGAAGAAAACCCATTAGACATGTGAGAAGAGACTCTTCTGGCAATGGCCATGAGACAAAAATGGGAATTAAGAGATTAAATGTTTTGCAGCATGCTGTTGTATTTGTGAATGGAGAACAATATTATGGAGCAAAGGCGAGTTTAAACATATGGGCGCCACGTGTAACGGATCAATATGAATTTAGTTTATCACAAATATGGGTAATTTCAGGGTCTTTTGGGAATGATTTGAACACCATTGAAGCTGGATGGCAGGTTAGTCCTGAACTGTATGGAGACAACAATCCTAGATTCTTTACGTATTGGACAACCGATGCTTATCAAGCGACTGGGTGTTATAATTTACTTTGTTCTGGGTTCGTTCAAACCAACAATAGGATCGCCATTGGAGCAGCAATCTCGCCTATATCTTCTTATAGAGGAAAGCAATTCGATATTGGTTTAATGGTTTGGAAGGATCCGAAGCACGGGCATTGGTGGTTGGAATACGGGTCGGGTTTGCTAGTCGGGTATTGGCCAGCATTTCTGTTCAGCCATTTAAGAAGTCATGCTAGCATGGTACAATTTGGAGGAGAAATAGTGAACAGCAGATCATCAGGGTTTCACACGGCCACACAGATGGGGAGTGGTCATTTTGCTGAAGAAGGGTTTGGAAAAGCTTCTTATTTCAGGAACTTGCAAGTGGTTGATTGGGATAATAATTTGCTTCCTCTTACAAATCTTCATCTCTTGGCTGACCATTCTGATTGTTATGATATTAGACAAGCCACTAATAATGTTTGGGGCACTTATTTTTACTATGGAGGGCCTGGTAGAAATGTCAAATGCCCTTAG 1302 40.25 MASSSSSSSSSSSSFVVFLLLFTSFSSVFSTSISHQIPPKNQTLFHPTKELKKLKHIRSYLRKINKPPIKTIRSSDGDVIDCVLSHLQPAFDHPELKGHTPILEPGERPRGNNSMEEVAENLQLWSASGDFCPEGTIPIRRTTEKDIFRASSFRRFGRKPIRHVRRDSSGNGHETKMGIKRLNVLQHAVVFVNGEQYYGAKASLNIWAPRVTDQYEFSLSQIWVISGSFGNDLNTIEAGWQVSPELYGDNNPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPISSYRGKQFDIGLMVWKDPKHGHWWLEYGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSSGFHTATQMGSGHFAEEGFGKASYFRNLQVVDWDNNLLPLTNLHLLADHSDCYDIRQATNNVWGTYFYYGGPGRNVKCP 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26489876 26492480 + ClCG01G013330.1 Cla01g01316 264905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01316 433 Gene3D - 207 320 - -
Cla01g01316 433 Pfam Neprosin 215 426 IPR004314 -
Cla01g01316 433 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 12 433 - -
Cla01g01316 433 Pfam Neprosin activation peptide 71 174 IPR025521 -
Cla01g01316 433 PANTHER - 12 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01316 - - - csv:101205708 749.199
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g01316 Cla06g01676 CCT
Cla01g01316 Cla06g01676 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01316 Cla-Chr1:26489876 Cla08g01736 Cla-Chr8:29857739 0 dispersed
Cla01g01316 Cla-Chr1:26489876 Cla05g02570 Cla-Chr5:36947547 0 wgd
Cla01g01316 Cla-Chr1:26489876 Cla06g01676 Cla-Chr6:30356427 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g789 Blo04g00727 . . Bda15g00548 . Bpe13g00246 Bma06g00214 . Cmo13g00905 Cmo18g00140 Cma10g00116 Cma11g00085 . . Sed08g0099 . . Bhi02g00481 Tan09g2278 Cmetu02g0831 . Hepe09g0215 . . Cla06g01676 Cam06g1864 Cec06g1913 Cco06g1918 Clacu06g1819 Cmu06g1761 Cre06g2578 Cone2ag0921 Cone16ag0086 Cone13ag0154 Cone19ag0153 Lsi02g00392 Csa01g00870 Chy12g01252 Cme12g01676 . . Bda11g01659 Bda14g00803 . Bpe15g00645 . Bma08g00090 Sed08g2526 Cmo10g00121 Cmo11g00086 Cma13g00872 Cma18g00182 Car13g00714 . . . Bhi08g01642 Tan05g1987 Cmetu12g0625 . Hepe07g2212 . . Cla01g01316 Cam01g1414 Cec01g1445 Cco01g1478 Clacu01g1381 Cmu01g1291 Cre01g1250 Lsi06g01565 Csa01g00133 Chy02g02594 Cme02g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001583 3 3 3 3 3 2 1 2 2 2 2 2 4 2 2 4 2 4 0 2 2 3 2 2 2 1 2 6 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01316 Cla_Chr01 FPKM 5.490234 5.929482 3.48891 3.201767 7.531551 8.250974 8.303285 7.882441 8.41186 7.900365