Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01317 ATGCATGCAAAACAGTGGATCCTCTACTTCATAATATTCTTGCTTTTCTCCTTCTTTTTAGTCGCTTCTGCTGTCAACCATCAAGGCCAAGCTCTACTATCATGGAAGCAATCTCTAAATTTATCGGCCCAAGAGTTAAACAATTGGGATTCCAATGATGAAACTCCCTGTGAGTGGTTTGGAATCATCTGCAACTTCAAACAGGAAGTTGTGGAAATAGAATTCAGGTACGTGGAATTGTGGGGTAAAATTCCTTCTAGTGTCAGCTCATTATTGACCCTGAACAAGCTCATCTTGGTGGGAACTAACCTCACTGGTTCAATTCCTAAAGAGATTGGCGATCTAAGGGAATTGAATACATTGGACCTCAGTTGCAATGCCTTGACAGGAGAAATCCCAATTGAGATATGTGGTTTGCTCAAGCTCGAAAAAATCGATCTCAGCTCGAATAGACTTGTGGGCTCGATTCCAACTGGAATTGGGAATCTCACGGTCCTTAAAGAGCTTGGTCTTCATGATAATCAACTTGGGGGTCAAATTCCCAGAAGCATAGGAAACTTGAAGCAGCTTAAGGTTATTAGAGCTGGTGGGAACAGAGACATCGAAGGGAATATACCTCAAGAAATTGGAAACTGTACCAATTTGGTGTTTGTAGGCTTTGCTGAAACCAGAATTTCAGGCTCTCTTCCACCAAGTTTAGGCCTCCTCAAGAAGCTCAAAACACTCGCATTGTACACAACCTTTCTCTCCGGCCAAATTCCTCCTGAAATTGGAAACTGCAGTGAGCTCCAATACATGTTTCTTTATGAGACATTGCTCACAGGTTCGATTCCAACCAGTTTTAGGAATCTCCAGAACCTGTTAAATCTGTTTCTATATAGAAATAGATTGACAGGCACGTTGCCAAAGGAGCTTGGAAACTGTTATCAATTATTCGATATCGACATTTCAATGAATTCTTTGACGGGAAGTATTCCAACCACATTTGGTAACTTGACTTCGCTACAAGAATTGAATTTGGGCATGAATAATATTTCAGGCGAGATACCAACCGAGATTGAGAATTGGAAGGAACTTACTCATTTGATGCTTGACAACAATCAAATCACGGGTTTGATACCTTCAGAACTGGGAAATTTGAAAAATTTGAGAATGTTGTTCTTGTGGCACAACAAGATCGAGGGAAGTATTCCGTCTTCAATTTCCAACTGCGAGATGCTTGAAGAGATGGATTTATCTGTAAACGGCTTGACAGGTCAGATTCCTGAAGAAATTTTCCACCTCAAGAAGCTAAATAGCCTCATGCTCCTCTCCAACAATCTGTCCGGCGTTATACCTCCAGAGATCGGAAATTGCTCGTCGCTAAATCGTTTCAGAGTTAGCAACAACATGCTCTTCGGCGCTCTCCCACCACAGTTTGGAAATTTGAAGAATCTGAGTTTCTTGGATCTTGGAGAGAATCAGTTCACTGGAGTCCTACCTGATGAGATTTCTGGCTGTACGAATCTAACATTCATCGACATACACTCCAACAACATTAGTGGAGCTTTACCCTCAGGTCTCAACCAGCTCATTTCCCTTCAAATCATTGACTTCTCAAATAATGCAATTGAAGGGAACATAGATCGGGGTCTCGGACTGTTAAGCTCACTGACAAAGCTTATTTTGTACAATAATCGATTCTCCGGCCCAATCCCTAGGGAGCTTGGCTCCTGCTTGAGGTTACAGTTATTGGACCTCAGTGTTAATCAACTTTCCGGTTATCTTCCGGCGGAGCTGGGAGAAATTCCAGCGCTAGAAATCGCTCTAAACCTAAGTTGGAACCAACTTGACGGTGAGATACCGAAGGAGTTCGCCTATTTAGACAGACTCGGAATCTTGGATCTCTCACACAACCACCTCAGCGGCGACCTCCAAACTATCGCCGTAATGCAGAATCTCGTGGTACTTAACATCTCCAACAACAATTTCTCAGGTCGAGTGCCGGTGACTCCCTTCTTCCAAAAACTCCCTCCCAGCGTCCTCTCCGGCAATCAAGACCTCTGCTTCGGCAGCCAATGCACCGATGAAAAGGAAAGCAGAAATTCAGAGCATGAATCAGCGTCTCGTGTGGCGGTGGTACTGCTGCTATGCCTAGCTTGGACGCTTCTCATCGCGGCGCTTTACGTGACATTCGGATCGAAGAAAATGGCCCAAAGACGCTTCTACGGTGGCCACGACGGTGACAGCGTCGATAGCGACTTGGAGATTGGCAATGAACTCGAATGGGAGATGACGCTCTATCAGAAACTCGACCTATCAATTTCTGACGTGGCAAAGAAACTTACAGCTGGCAACATCCTCGGCCGCGGCCGGTCCGGCGTCGTTTACCAGGTCAACATCCCGCCCGGTTTAACAATCGCCGTCAAACGGTTCAAGACATCGGAGAAGTTCGCCGCCGCCGCATTCACCTCCGAAATCTCGACTCTAGCCAGTATCCGGCACCGAAATATTATCCGATTGCTCGGTTGGGCGGTGAATCGTAAAACGAAATTGTTATTCTATGACTATTGGCGACAAGGAAACCTCGGCGGTTTGTTACACGAGCGCTGCACCGGCGGTTACGTAATCGGCTGGAATGCACGGTTCAAGATCGCGATCGGAGTGGCGGACGGATTGGCTTACTTGCATCATGACTGCGTGCCGGCGATTTCGCACCGGGACGTGAAAGTCCAAAATATATTGTTGAGCGATGAATACGACGCGTGCCTTACAGATTTTGGATTCGCAAGGTTCACCGAAGGCAATCAAAACGACTCATCGTCTGCCAATCCGCAATTCGTCGGATCGTACGGCTACATTGCACCGGAGTATGTTCATACGCTGAAAGTAACAGAGAAAAGCGACGTGTATAGTTACGGAATCGTGCTTTTAGAGATGATTACCGGTAAAAAGCCAGCCGATCCTTCATTTCCAGAAGGCCAACACATAATCCAATGGGTTCAACATCATCTACACAGCCAGAACGATCCAATCGAGCTTTTAGATCCAAAACTTAAAATCCATCCCGACGCCGAAATTCATGAAATGCTGCAGGTCCTTGAAATCGCCCTTCTATGCACCAATCATCGCGCCCATGATCGCCCGATGATGAAGGATGTGGCTGCATTATTGAGAAGAATTCGAACCGAGTCAACGATGATGAGGATCAAGGGAAACAAACCTGGTAATAGGTTGAAGAGATTCGAAATTCAGTCGTATTAG 3243 45.54 MHAKQWILYFIIFLLFSFFLVASAVNHQGQALLSWKQSLNLSAQELNNWDSNDETPCEWFGIICNFKQEVVEIEFRYVELWGKIPSSVSSLLTLNKLILVGTNLTGSIPKEIGDLRELNTLDLSCNALTGEIPIEICGLLKLEKIDLSSNRLVGSIPTGIGNLTVLKELGLHDNQLGGQIPRSIGNLKQLKVIRAGGNRDIEGNIPQEIGNCTNLVFVGFAETRISGSLPPSLGLLKKLKTLALYTTFLSGQIPPEIGNCSELQYMFLYETLLTGSIPTSFRNLQNLLNLFLYRNRLTGTLPKELGNCYQLFDIDISMNSLTGSIPTTFGNLTSLQELNLGMNNISGEIPTEIENWKELTHLMLDNNQITGLIPSELGNLKNLRMLFLWHNKIEGSIPSSISNCEMLEEMDLSVNGLTGQIPEEIFHLKKLNSLMLLSNNLSGVIPPEIGNCSSLNRFRVSNNMLFGALPPQFGNLKNLSFLDLGENQFTGVLPDEISGCTNLTFIDIHSNNISGALPSGLNQLISLQIIDFSNNAIEGNIDRGLGLLSSLTKLILYNNRFSGPIPRELGSCLRLQLLDLSVNQLSGYLPAELGEIPALEIALNLSWNQLDGEIPKEFAYLDRLGILDLSHNHLSGDLQTIAVMQNLVVLNISNNNFSGRVPVTPFFQKLPPSVLSGNQDLCFGSQCTDEKESRNSEHESASRVAVVLLLCLAWTLLIAALYVTFGSKKMAQRRFYGGHDGDSVDSDLEIGNELEWEMTLYQKLDLSISDVAKKLTAGNILGRGRSGVVYQVNIPPGLTIAVKRFKTSEKFAAAAFTSEISTLASIRHRNIIRLLGWAVNRKTKLLFYDYWRQGNLGGLLHERCTGGYVIGWNARFKIAIGVADGLAYLHHDCVPAISHRDVKVQNILLSDEYDACLTDFGFARFTEGNQNDSSSANPQFVGSYGYIAPEYVHTLKVTEKSDVYSYGIVLLEMITGKKPADPSFPEGQHIIQWVQHHLHSQNDPIELLDPKLKIHPDAEIHEMLQVLEIALLCTNHRAHDRPMMKDVAALLRRIRTESTMMRIKGNKPGNRLKRFEIQSY 1080
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26502600 26505931 - ClCG01G013340.1 Cla01g01317 264906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01317 1080 SUPERFAMILY RNI-like 349 660 - -
Cla01g01317 1080 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 1063 - -
Cla01g01317 1080 SMART serkin_6 775 1032 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01317 1080 Pfam Protein kinase domain 778 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01317 1080 Gene3D Ribonuclease Inhibitor 420 698 IPR032675 -
Cla01g01317 1080 Gene3D Phosphorylase Kinase; domain 1 751 850 - -
Cla01g01317 1080 ProSiteProfiles Protein kinase domain profile. 775 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01317 1080 SUPERFAMILY Protein kinase-like (PK-like) 760 1051 IPR011009 -
Cla01g01317 1080 Gene3D Transferase(Phosphotransferase) domain 1 852 1071 - -
Cla01g01317 1080 Pfam Leucine rich repeat 358 417 IPR001611 GO:0005515
Cla01g01317 1080 Pfam Leucine rich repeat 454 513 IPR001611 GO:0005515
Cla01g01317 1080 Pfam Leucine rich repeat 94 152 IPR001611 GO:0005515
Cla01g01317 1080 PANTHER OS01G0170300 PROTEIN 8 1063 - -
Cla01g01317 1080 SUPERFAMILY RNI-like 73 413 - -
Cla01g01317 1080 ProSitePatterns Protein kinases ATP-binding region signature. 781 803 IPR017441 GO:0005524
Cla01g01317 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 897 909 IPR008271 GO:0004672|GO:0006468
Cla01g01317 1080 SMART LRR_sd22_2 332 358 - -
Cla01g01317 1080 SMART LRR_sd22_2 380 406 - -
Cla01g01317 1080 SMART LRR_sd22_2 139 165 - -
Cla01g01317 1080 SMART LRR_sd22_2 500 523 - -
Cla01g01317 1080 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cla01g01317 1080 SMART LRR_typ_2 380 404 IPR003591 -
Cla01g01317 1080 SMART LRR_typ_2 332 356 IPR003591 -
Cla01g01317 1080 SMART LRR_typ_2 357 379 IPR003591 -
Cla01g01317 1080 SMART LRR_typ_2 163 187 IPR003591 -
Cla01g01317 1080 SMART LRR_typ_2 548 572 IPR003591 -
Cla01g01317 1080 SMART LRR_typ_2 476 499 IPR003591 -
Cla01g01317 1080 SMART LRR_typ_2 284 308 IPR003591 -
Cla01g01317 1080 SMART LRR_typ_2 115 139 IPR003591 -
Cla01g01317 1080 SMART LRR_typ_2 644 677 IPR003591 -
Cla01g01317 1080 SMART LRR_typ_2 428 452 IPR003591 -
Cla01g01317 1080 Gene3D Ribonuclease Inhibitor 24 174 IPR032675 -
Cla01g01317 1080 Gene3D Ribonuclease Inhibitor 175 279 IPR032675 -
Cla01g01317 1080 Gene3D Ribonuclease Inhibitor 314 419 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01317 - - - csv:101205934 1872.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g01317 Cla06g01679 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01317 Cla-Chr1:26502600 Cla09g02099 Cla-Chr9:38517820 0 dispersed
Cla01g01317 Cla-Chr1:26502600 Cla06g01679 Cla-Chr6:30378810 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g792 . . . . . . . . . Cmo18g00141 Cma10g00113 Cma11g00083 Car10g00102 . . . . Bhi02g00489 . . . . . . Cla06g01679 . . . . . . Cone2ag0922 Cone16ag0085 . . Lsi02g00394 Csa01g00871 . Cme12g01675 . . . . . . . . . Cmo10g00117 Cmo11g00084 . Cma18g00183 . . . Cpe18g00852 Bhi08g01644 . . . . . . Cla01g01317 . . . . . . Lsi06g01569 Csa01g00130 Chy02g02597 Cme02g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002837 0 2 0 0 0 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 3 2 3 2 1 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80259 PF00069 Pkinase 1.50E-40 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01317 Cla_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0