Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01323 ATGATCAAAATGGGATCAACAACAACAAACAGCCATTATTATAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGAAGGATGTGTTTTTGCACCCTATTTTCCACCTGAAGAACCCCAAAAATTTGCCAATGTCCACAAGGTATTCGGAGCGAGTAACGTTGCGAAGCTCCTGAACGACGTTCTTCCTCATCAACGACAAGATGCCGTGGTTTCGCTCGCCTATGAAGCCGAGGCGAGAATCAGAGATCCTGTTTATGGCTGTGTTGGAGCAATTTCTTTCCTCCAAAAACAGGTCCAAAAGCTCCAAAAAGAACTTGATGCTGCTAAAGCTTGCCTTTTTCTCTACTCTTGCACTGATTTCTCAACTCCCCTTTTGCCTCCTCACCCTCAGATTATTACTACTCCTCATCCACTGATTTGGAATAATAATCTTAATCTTAATCTTAATAATAATAATCATGATATTACTAATTCTTCTATGTATTTTAATGGAGGAATTTGA 513 39.77 MIKMGSTTTNSHYYSPCAACKFLRRKCLEGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNDVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQKLQKELDAAKACLFLYSCTDFSTPLLPPHPQIITTPHPLIWNNNLNLNLNNNNHDITNSSMYFNGGI 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26581837 26584092 - ClCG01G013400.2 Cla01g01323 264912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01323 170 Coils Coil 95 115 - -
Cla01g01323 170 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Cla01g01323 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 135 - -
Cla01g01323 170 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
Cla01g01323 170 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 10 135 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01323 Cla06g01688 CCT
Cla01g01323 Cla06g01688 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01323 Cla-Chr1:26581837 Cla11g01084 Cla-Chr11:21962719 2.29E-53 dispersed
Cla01g01323 Cla-Chr1:26581837 Cla10g01326 Cla-Chr10:28218498 7.96E-63 wgd
Cla01g01323 Cla-Chr1:26581837 Cla06g01688 Cla-Chr6:30476051 7.48E-67 wgd
Cla01g01323 Cla-Chr1:26581837 Cla09g01879 Cla-Chr9:36482539 3.91E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60415 PF03195 LOB 3.90E-42 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01323 - - zju:107418298 198.364