Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01326 ATGGCTGCCGCAGCTCCGCCTCCTGCTGCCGCTGCTGCTGCTGTTGAAGAAGGAGCAATTCTTCACGACTTCACTCCTCCGATTCTATTAGCCGATAAGATTCTGAAATTAGCTCAAGAAGCAGTTTCTTTGAGACAAGAATGCGTTGACTTAGCCAAACAAGTCGATAAAATCTACCGGATGCTTCAAGCCACCGTTCGCTTAATCACCACCACCACACAGCCGCTGTACGACCGTCCAATTCGCCGGATCGTGGCCGATGTCACGAAGAATCTCGAACGTGCTTGGAACTTCGTTAGCAAGTGCCGCCATGGTGGGTTTCTACGGCAAGTTTTCTCCATGACAACCATCGCCGATTTTCGTAAGGTTTCAAGTCTTCTTGAATCCTCCATTGGCGATATGAAATGGCTTCTTTCAATTTTTGATTCCGATGGCACTGTTGGGCTGCCTCCGATTGCGAGTAATGACCCAACTTTGGCCTATATTTGGCCCAATATCGCCACAATCCAAATGGGTTCGGTTAGAAATCGGGTCGAAGCTGCGAATCAATTGACATTACACACTCGTGGGAACGAGCGGAATCAAAAAATCGTAGTTGAAGAAGGTGGGGTTCCGCCGTTGCTTAAATTACTCAAGGAATACTCATCCCCTGATGCTCAAATCGCCGCTGCTAATGTTCTTATCAATGTCGCTTCTGTTCCCGATAGGGTTGAGTCGATTATCAATATTCCTGGGGTTCCGACTATTGTTCAGGTTCTTAATGATTCCCCCATGAGGGTTCAGATTATTGTTGCAAAATTAGTTTCCAAAATGGCGGAACTTAGCAATCTTGCTCAAGAGGAGTTTGCTAGAGAGAACGTAACTAAACCTTTGGTTACTTGTTTGTCGATTGATATGGTTCTTGATGATCCTAAGCTTCAATTGGGGAAACCCAGTTTTCATTCTGTGGTTGAGATTAATAAGGAGCTCGCTGGGAAAGCTTCGAATACTTCACTGAATTCATCTTCGTCTTCCTCACATTCTGATGGTAGTAGCCGAGGGGGAAATCACAGGAAGGAGAAAGAGGTTGAAAGCTCTGAAGTTAAGCTGCAGCTTAAAGTGAATTGTGCTGAGGCTCTTTGGAGACTCTCTAAAGGGAGCTTAACGAATAGTCGAAAAATTACAGAGACAAAAGGGTTGTTGTGTTTGGCGAAGGTTATTGAGAATGAAGAAGGGGAATTGCAATACAATTCCTTGATGACAATTATGGAGGTAACAGCTGTTGCAGAGTCCAAGCCAGATCTTAGACATGCTGCCTTTAAGATCACTTCACCGGCTCCGAAAGCGGTTCTTGATCAACTTTCGAGAATGATTCAGAAGGATAGAGATCCAATGTTGCAAGTTCCTGCTATTCAATCGATTGGTTCCCTTGCCAGGATTTTTCCTGCAAAGGAATCACGGATTATCAATCTTTTGGTTTTGCAAATGAAGAGTATGGATATGGATGTGGCCATAGAGGCTGTCATTGCATTAGGGAAGTTTGCTTGCCCTGAAAATTATAATTGTGCAGCGCATTCGAAGTCGATTATCGAGTTTGGTGGCGTTCCTCCTCTAATGAAACTTTTGAGACAAAATGATCAGGCTCAAGTGCCTGGCCTAATGCTGCTATGTTATCTTGCACTGAGTGCAGGCAATAGTAAGGCTTTAGAGCAGGCTCATGCCTTGAATGCAATGAAGGGGATGGCTCGGCTTGTTTTCGCTCATCCTGACTTGCACGAATTGTATGCTAAAGCCATACACCACCTTACTCTTTATCAGGCTGGAGCTCATCATATCCATAGACACAAACTCCGGCTGCACGAGTTGTTCGGTAAATCGCCTGTAGAGGCTGAAAACAGGACAGCTAAGGACAGTTCAGCCTATTACTTCAGGCTCGGGCGGCGCCCTTAA 1929 45.26 MAAAAPPPAAAAAAVEEGAILHDFTPPILLADKILKLAQEAVSLRQECVDLAKQVDKIYRMLQATVRLITTTTQPLYDRPIRRIVADVTKNLERAWNFVSKCRHGGFLRQVFSMTTIADFRKVSSLLESSIGDMKWLLSIFDSDGTVGLPPIASNDPTLAYIWPNIATIQMGSVRNRVEAANQLTLHTRGNERNQKIVVEEGGVPPLLKLLKEYSSPDAQIAAANVLINVASVPDRVESIINIPGVPTIVQVLNDSPMRVQIIVAKLVSKMAELSNLAQEEFARENVTKPLVTCLSIDMVLDDPKLQLGKPSFHSVVEINKELAGKASNTSLNSSSSSSHSDGSSRGGNHRKEKEVESSEVKLQLKVNCAEALWRLSKGSLTNSRKITETKGLLCLAKVIENEEGELQYNSLMTIMEVTAVAESKPDLRHAAFKITSPAPKAVLDQLSRMIQKDRDPMLQVPAIQSIGSLARIFPAKESRIINLLVLQMKSMDMDVAIEAVIALGKFACPENYNCAAHSKSIIEFGGVPPLMKLLRQNDQAQVPGLMLLCYLALSAGNSKALEQAHALNAMKGMARLVFAHPDLHELYAKAIHHLTLYQAGAHHIHRHKLRLHELFGKSPVEAENRTAKDSSAYYFRLGRRP 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26629366 26631394 - ClCG01G013440.1 Cla01g01326 264915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01326 642 SUPERFAMILY ARM repeat 175 540 IPR016024 -
Cla01g01326 642 PANTHER ARMADILLO REPEAT ONLY 1 PROTEIN 16 610 - -
Cla01g01326 642 SMART arm_5 515 554 IPR000225 GO:0005515
Cla01g01326 642 SMART arm_5 191 232 IPR000225 GO:0005515
Cla01g01326 642 Gene3D - 169 329 IPR011989 -
Cla01g01326 642 Gene3D - 22 140 IPR036537 GO:0007166
Cla01g01326 642 PANTHER ARMADILLO REPEAT ONLY 4 16 610 - -
Cla01g01326 642 Gene3D - 351 608 IPR011989 -
Cla01g01326 642 Pfam Armadillo/beta-catenin-like repeat 191 224 IPR000225 GO:0005515
Cla01g01326 642 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 202 245 IPR000225 GO:0005515
Cla01g01326 642 MobiDBLite consensus disorder prediction 345 359 - -
Cla01g01326 642 Coils Coil 34 54 - -
Cla01g01326 642 MobiDBLite consensus disorder prediction 328 344 - -
Cla01g01326 642 MobiDBLite consensus disorder prediction 328 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01326 - - - csv:101205472 1072.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g01326 Cla06g01692 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01326 Cla-Chr1:26629366 Cla08g01729 Cla-Chr8:29820730 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g808 . . . . . . . Bma12g01051 . Cmo18g00148 Cma10g00100 Cma11g00072 Car10g00088 Car11g00064 . . Cpe04g01579 Bhi02g00507 Tan09g2296 . . Hepe09g0230 . . Cla06g01692 Cam06g1880 Cec06g1927 Cco06g1932 Clacu06g1836 Cmu06g1778 Cre06g2593 . . Cone13ag0162 . Lsi02g00406 Csa01g00879 Chy12g01244 Cme12g01667 . Blo15g00254 . . . . . . Sed01g1626 Cmo10g00103 Cmo11g00074 . Cma18g00187 . Car18g00179 Cpe09g01008 Cpe18g00864 Bhi08g01653 Tan05g1977 Cmetu12g1973 Lac10g0487 Hepe07g2202 . . Cla01g01326 Cam01g1402 Cec01g1434 Cco01g1489 Clacu01g1392 Cmu01g1300 Cre01g1240 Lsi06g01586 Csa01g00117 Chy02g02610 Cme02g02007
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013810 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01326 Cla_Chr01 FPKM 11.702317 12.133497 17.531473 16.638565 33.512684 28.295464 34.667358 23.562149 22.145567 22.666634