Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01329 ATGTGTTTCCGTAGTGTAATCATGATATACATGAGGTCTTTGGGACCCACATCGGCACACATTGGGTCGTGTGTTGGGGTGCTTTGCCTTTTGGAGGCTGCTCTATGGGCAGCTATGAGGTTGTATGTGTATGTATTGGAGGCCAAGGACCTCCATGTGAAGGACTCGTTTGTGAAGCTTCGAGTTGGGAGGCGTAAGGCCAAGACGAGGATTATGAGAAATAGCCCAAATCCTATTTGGAATGAGGAGTTCATTTTCAAGTTTCGTGATGTTGATGATGAACTAGTTGTGTCTATTTATGAGCACAGTGATGAATCCAACTTCTTCCATGCCTCATCTGGTTTGATTGGTCGGGTTCGGATACCCATATGGACCGTTGCTGCTGAGGATTCACAGACCTTGCGACCAACTTGGTTTGATATACGAAGGTCCAAAACCGAGAAATTCATCAATGAAGTTGCAGGGAAAGTGCTTCTTATTGTCTCATTACATGGAAAAGGCAATGTACTCAATCAATCAAGTGTTACTAATACTAATCCTAAACCATTGGAAGACTCATCTGCAACTTCGCAGGATTTGATTGGTGCCAAATCTTCATCCAACAAAGCTATCAAATGGAAGCCTAACAAGAAGACTATAGTGAGTCGTTTGGAGAGGTTGTTCCATAAGAGTGATGAGGATACAAGAACAGATAATTCTTCAGAGTCATCAAGTGACATGTCTGATACTGAAGAGCGCGTAAATGGGGATCCCTCTGAATCTACCTTTGATGAAGCTATTGAGGTACTGCAGTCAAGAAGCAATGAACAGGAAATGCCAGAAAACCTATCCGGTGGCATTCTTGTTGATCAGATGTATGTAGTTTCACCAGATGATATGAACAAACTTCTCTTTTCCCCAGATTCACAGTTCAGGAGAGAACTAGCAGAACATCAGGGAATAACAAATTTAGAAGAGGGAACTTGGTCTTGGAAACAAGGGGATGTACCTTGTCTATCACGGATTGTGTCTTATAAAAAACCCGCAACAAAGATTGTTGGAGCTATTAATGCTACGGAGGAGCAAACTTACATTAAAGGGGATGGATGGGAATTTGCTGTCTTAGTAAATGTAAGTACACCTGAGGTTCCATTTGGTAATGCATTCAATGTTGAGTTACTTTACAAGATAATGCCTGGCCCTGAGCTAATTTCTGGAGAAGAGACTTCTCAATTTGTAGTTTCTTGGGGTATAAACTTCCTCCATAGTACAATGATGAAAGGCATGATTGAGAAAGGGGCTCGACAGGGACTGGAGGAAAATTTTGTCCAGTTCACTAACTTGCTGTCTCAACATCTTAAAATTCCAAATTCTACTGAGCTATCGAACAAGGATCATGTGTTGTCAACTTCTGAGAATGACCGCCATTCAGATTTTGAATTGGCCAGCCAGTACTTCTGGAACTTTACTGTATTTTCTTCCATGGTCTTCCTGCTATACGTTCTTGTGCATATCATTCTTTCTAAGCCAAAAACAAAGCAAGGCTTGGAGTTCACTGGTATGGATCTGCCAGATAGTTTAGGAGAACTTGTTACTAGTGGAATTTTAGTCCTTCAGTTGGAACGCGTTTATAACATGGTCTCACATTTCATTCAAGCTAGGTTAAAAAGAGGAAGTGACCATGGGGTCAAAGGCCAAGGAGATGGATGGATCCTAACCATAGCTCTTATAGAAGGAGTGAACATTTCATCCTTGGATTCTTCCGGATCCTCCGACCCTTGTGTAGTTTTCACATGCAATGGTAAAAAAAGAACTAGCTCCGTTGAGCTTCAAACTCATGAGCCTCAATGGAATGAGGTACTCGAGTTCGATGCCATGAAGGAACCACCATCAGTTTTATATGTGGAGGTCTTTGACTTTGATGGTCCATTTGACCAGGCTACTTCACTTGGGCATGCAGAGATTAATTTCCTAAAATATAAATCAACTGAACTTGCAGATATATGGGTTCCCCTTGAGGGGAAGCTTGCTCAGTCTTCTCAGTCGAAGCTACACTTGAGAATCTTCTTAGATAATACAGATGGAGTGGAAACAATAAGACAATACTTGTTCATGAAGGGAAAGGAGGTTGGGAAGAAGCTGCATCCTAGGTCACCTTACAGGAACTCGACATTTCAAAAGCTTTTCGGTTTTCCAGAAGACGAGTTTCTTGTCAGCGAGTTCACGTGCTCCTTGAAAAGAAAAATGCTTCTCCAGGGGAGATTATTTCTATCTGCCAGAGTCATTGGGTTTTATGGCAATTTCTTTGGACAAAAAACAAAATTTTTCTTTCTCTGGGAGGACATTGAAGATATACAACTACTCCACCCTTCCCTTTCCTCTCTGGGTAGCCCATCATTAGTCATTATTCTTAAAAAAGGTCGAGGTGTTGACGCAAGTCACGGTGCGAAGTCTCAAGATGAACAGGGCAGGCTCAGATTTTACCTCCAATCATTTGTCTCATTCAATGTAGCCAGCAGGACGATTATGGGTATGTGGAGAACAAGAAAATCAGCCCTTGATCAGAAAGCACAAGTAGCTGAACCGTTGAATAATTCCGAAGAAAGGTCAGTTTTGGTGGAGGATGTGGAATGTTTTTTGGATGTAGAAGATACAAAGATGTCAAAGTTGTATGTTGCAGAACTTCCTCTAAATGTAAAATCATTGATGGATTTTTTTGAGGGTGGCAAACTAGAGCACAAGGTGATGGAAAAATCTGGTTGTCTAAATTACACGACGACGCCATGGGAATTCGTGAAACCCGGTACCCTCGAAAGACGCATTTCTTACCAATTCAATCATGACATATCAATCTTTGAAGGCAAAGTGACATGCATTCAGCAAAAAATCCCCATTGCAGACAGTGATGAAGACGAATGGGTACTAAACGAGGTCATGAGGTTGCACGATGTCCCGTTTGACAACTGTTTTCGTGTTCATTTCAGGTACTGTTTTGAGGATTCTGAGATAGCTAAAAATGCTTGCAAATGCAAGGCTTTCTATGGAATCACTTGGCTTAAAAGCACGGAGCTTCAGCAGAAGATCACCCAGAACATAGCTGACGAGTTTGGACATCGACTTAAACTCATATTTGAATTGATTGAGAGGGAAATTCTTATTGCAACCCAATCTTAA 3153 41.55 MCFRSVIMIYMRSLGPTSAHIGSCVGVLCLLEAALWAAMRLYVYVLEAKDLHVKDSFVKLRVGRRKAKTRIMRNSPNPIWNEEFIFKFRDVDDELVVSIYEHSDESNFFHASSGLIGRVRIPIWTVAAEDSQTLRPTWFDIRRSKTEKFINEVAGKVLLIVSLHGKGNVLNQSSVTNTNPKPLEDSSATSQDLIGAKSSSNKAIKWKPNKKTIVSRLERLFHKSDEDTRTDNSSESSSDMSDTEERVNGDPSESTFDEAIEVLQSRSNEQEMPENLSGGILVDQMYVVSPDDMNKLLFSPDSQFRRELAEHQGITNLEEGTWSWKQGDVPCLSRIVSYKKPATKIVGAINATEEQTYIKGDGWEFAVLVNVSTPEVPFGNAFNVELLYKIMPGPELISGEETSQFVVSWGINFLHSTMMKGMIEKGARQGLEENFVQFTNLLSQHLKIPNSTELSNKDHVLSTSENDRHSDFELASQYFWNFTVFSSMVFLLYVLVHIILSKPKTKQGLEFTGMDLPDSLGELVTSGILVLQLERVYNMVSHFIQARLKRGSDHGVKGQGDGWILTIALIEGVNISSLDSSGSSDPCVVFTCNGKKRTSSVELQTHEPQWNEVLEFDAMKEPPSVLYVEVFDFDGPFDQATSLGHAEINFLKYKSTELADIWVPLEGKLAQSSQSKLHLRIFLDNTDGVETIRQYLFMKGKEVGKKLHPRSPYRNSTFQKLFGFPEDEFLVSEFTCSLKRKMLLQGRLFLSARVIGFYGNFFGQKTKFFFLWEDIEDIQLLHPSLSSLGSPSLVIILKKGRGVDASHGAKSQDEQGRLRFYLQSFVSFNVASRTIMGMWRTRKSALDQKAQVAEPLNNSEERSVLVEDVECFLDVEDTKMSKLYVAELPLNVKSLMDFFEGGKLEHKVMEKSGCLNYTTTPWEFVKPGTLERRISYQFNHDISIFEGKVTCIQQKIPIADSDEDEWVLNEVMRLHDVPFDNCFRVHFRYCFEDSEIAKNACKCKAFYGITWLKSTELQQKITQNIADEFGHRLKLIFELIEREILIATQS 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26644749 26651255 + ClCG01G013470.2 Cla01g01329 264918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01329 1050 ProSiteProfiles C2 domain profile. 13 139 IPR000008 -
Cla01g01329 1050 Pfam VAD1 Analog of StAR-related lipid transfer domain 281 430 IPR031968 -
Cla01g01329 1050 Pfam VAD1 Analog of StAR-related lipid transfer domain 884 1027 IPR031968 -
Cla01g01329 1050 Gene3D - 714 841 IPR011993 -
Cla01g01329 1050 CDD C2 565 665 - -
Cla01g01329 1050 Pfam C2 domain 40 140 IPR000008 -
Cla01g01329 1050 Pfam C2 domain 563 665 IPR000008 -
Cla01g01329 1050 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 563 687 IPR035892 -
Cla01g01329 1050 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 40 172 IPR035892 -
Cla01g01329 1050 Gene3D C2 domain 549 683 IPR035892 -
Cla01g01329 1050 SMART C2_3c 564 662 IPR000008 -
Cla01g01329 1050 SMART C2_3c 40 135 IPR000008 -
Cla01g01329 1050 ProSiteProfiles C2 domain profile. 545 663 IPR000008 -
Cla01g01329 1050 ProSiteProfiles VASt domain profile. 879 1044 IPR031968 -
Cla01g01329 1050 Gene3D C2 domain 32 164 IPR035892 -
Cla01g01329 1050 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 39 1049 - -
Cla01g01329 1050 MobiDBLite consensus disorder prediction 170 196 - -
Cla01g01329 1050 MobiDBLite consensus disorder prediction 224 255 - -
Cla01g01329 1050 Pfam GRAM domain 717 782 IPR004182 -
Cla01g01329 1050 ProSiteProfiles VASt domain profile. 277 450 IPR031968 -
Cla01g01329 1050 MobiDBLite consensus disorder prediction 224 252 - -
Cla01g01329 1050 SMART gram2001c 716 782 IPR004182 -
Cla01g01329 1050 PANTHER BNAA05G37250D PROTEIN 39 1049 IPR044511 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01329 - - - bhj:120083743 1821.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01133 Cla-Chr1:18877966 Cla01g01329 Cla-Chr1:26644749 0 dispersed
Cla01g01329 Cla-Chr1:26644749 Cla07g01442 Cla-Chr7:31651660 3.80E-13 dispersed
Cla01g01329 Cla-Chr1:26644749 Cla06g01466 Cla-Chr6:28204565 3.14E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g818 . . . . . . . . . Cmo18g00151 . . . . . . . . . . . . . . . . . . . . . Cone2ag0931 . . . Lsi02g00412 Csa01g00881 Chy12g01241 Cme12g01664 . . . . . . . . . . . . Cma18g00190 . Car18g00182 Cpe09g01005 . Bhi08g01658 Tan05g1972 . . . . . Cla01g01329 Cam01g1399 Cec01g1431 Cco01g1492 Clacu01g1396 Cmu01g1304 Cre01g1237 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012076 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 4 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01329 Cla_Chr01 FPKM 1.190025 1.099808 3.089798 3.140692 1.22168 1.60389 1.640298 3.101923 3.057498 3.289468