Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01340 ATGGGGAAGAACGAATTTCTAACCCCTAAAGCGATCGCGAACAGAATCAAGGCAAAAGGGTTACAGAAACTCAGATGGTATTGCCAGATGTGTCAAAAGCAGTGCCGGGATGAGAATGGCTTTAAATGTCACTGTATGAGTGAAAGCCATCAGCGCCAGATGCAGATCTTTGGCCAAAATCCTCATCGTATTGTTGAGGGCTACTCTGAAGAATTTGAGAGTTCTTTCATGGAGCATCTTAAGCGTAGCCATCGGTTCAGTCGCGTGGCAGCTACAGTTGTCTATAATGAATACATTAACGACAGACATCACATTCATATGAATTCAACGCAGTGGGCTACTCTTACTGAGTTTGTAAAGCACTTGGGTCGAACTGGGCAATGTAAGGTAGAGGAGACGCCCAAGGGTTGGTTCATTACTTACATAGATAGAGATTCAGAGACACTTTTTAAAGAGAGAATGAAAAATAAGAGAATGCGTGCAGATTTAGCTGAGGAAGAGAAGCAAGAGAGAGAGATAAAGAGGCAAATTGAGAGGGCTGAGCAATTAGCACCTGTGGCTTCTGTATCTGCTGAGCCTTTGGAGACTGAACAAACGAGAGAGTTGAAATTGGATACTGGGGTTAAGCTAGGATTTGCTTTGGGAACATCATCAAAATTGAAGGAGAAATGTGAGAGTTCCATGGTGGTTTTTGATGAGGATGAGACACATGAGACTGCCAAGGGGAAACCTGTAGAGAATTCCAAAAACAAGACGGCTGGTGGTGGTCTGTCAGCTTTGGAGGCATTGATGAGAGAAGAAGAGATGAAGAAGGAGAAGCTTAATAGGAAGGATTACTGGCTTTGCGAGGGAATAATTGTAAAGATCATGAGCAAGGATTTGGCTGAGAAGGGATTCTATAAACAGAAGGGAGTTGTGCGAAAAGTGATTGATAAATATGTTGGAGAGATCGAAATGCTCGATGGCAAGCATGTGTTGAGAGTTGATCAAGAAGAATTAGAAACAGTGATACCACAAATTGGTGGCTTAGTAAAGATTGTAAATGGGGCGTATCGTGGATCAAATGCTAGGTTGTTGGGCGTTGATACTGATAAGTTTTGTGCTAAAGTGCAAATAGAGAAGGGTGTGTATGATGGCAGGGTACTTAAGGCTGTTGAATATGAAGATATTTGTAAACTTGCATCATAA 1188 42.17 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGYSEEFESSFMEHLKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKHLGRTGQCKVEETPKGWFITYIDRDSETLFKERMKNKRMRADLAEEEKQEREIKRQIERAEQLAPVASVSAEPLETEQTRELKLDTGVKLGFALGTSSKLKEKCESSMVVFDEDETHETAKGKPVENSKNKTAGGGLSALEALMREEEMKKEKLNRKDYWLCEGIIVKIMSKDLAEKGFYKQKGVVRKVIDKYVGEIEMLDGKHVLRVDQEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTDKFCAKVQIEKGVYDGRVLKAVEYEDICKLAS 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26824138 26825325 - ClCG01G013570.1 Cla01g01340 264929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01340 395 Gene3D - 284 337 - -
Cla01g01340 395 SMART Kin17_mid_2 52 178 IPR019447 -
Cla01g01340 395 Gene3D - 338 394 IPR014722 -
Cla01g01340 395 Pfam KN17 SH3-like C-terminal domain 276 329 IPR041330 -
Cla01g01340 395 PANTHER BNAA05G13760D PROTEIN 1 394 - -
Cla01g01340 395 MobiDBLite consensus disorder prediction 235 254 - -
Cla01g01340 395 Coils Coil 154 183 - -
Cla01g01340 395 CDD KOW_KIN17 340 393 IPR041995 -
Cla01g01340 395 Gene3D - 60 160 IPR038254 -
Cla01g01340 395 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Cla01g01340 395 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Cla01g01340 395 Coils Coil 257 277 - -
Cla01g01340 395 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 394 IPR037321 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01340 Cla-Chr1:26824138 Cla05g01408 Cla-Chr5:19271088 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01340 K13102 - csv:101216499 717.227