Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01348 ATGCAAGGTTTTCGCAGAATCAATCAATTGGTACGAAGGCAGAGTCCTGATGCTCATTTCAAATTGATTAGAGGTTATCCTCTGAATGGGGATGCTGGCTGTAGCTGCTCGGCTCCGACGTCGATGGAAAATAGTTTTACTATTCCTTGTCTTTTTGGGAATTCATATGGGTCTTTGAGCGGTTCCCTCTTGAGCTCTTTCTCGAGGTTCGGCAATCAATATCCGGAAGCCTTCAAAAATACGAGCTCCCAAATGGGATTTGTGCCTTCGAGAAAGCATGTATCTTCAACTTGTTCAGCATTCCAAAGTTCTTGGCCACATATATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCTACGACAAGCTCGATGGAATCATCTCTACAAGGATCCACTGCAGTTGATTCTGATATAACTCCTCGTATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGATTTTAGATAAGGAAGCTGTTGAGGAGGCAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGGCGTGTCTCAACATTAAAAGGTATTGTAATAGCCAGAAGAAATGCTGGTCTCAACACAACTTTTAGATTAAGGAGGCTAGTTGCTGGTGTTGGGATTGAGTCCCTCTTCCCTCTATACTCACCAAACATTAAAGAGATCAAGGTGTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTACCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAG 810 42.84 MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDAGCSCSAPTSMENSFTIPCLFGNSYGSLSGSLLSSFSRFGNQYPEAFKNTSSQMGFVPSRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLYSPNIKEIKVLDKKKVRRAKLYYLRDKMNALKKH 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27015307 27018823 + ClCG01G013653.1 Cla01g01348 264937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01348 269 Gene3D - 149 269 IPR038657 -
Cla01g01348 269 PRINTS Ribosomal protein L19 signature 223 246 IPR001857 GO:0003735|GO:0005840|GO:0006412
Cla01g01348 269 PRINTS Ribosomal protein L19 signature 164 193 IPR001857 GO:0003735|GO:0005840|GO:0006412
Cla01g01348 269 PANTHER RIBOSOMAL PROTEIN L19 63 266 IPR001857 GO:0003735|GO:0005840|GO:0006412
Cla01g01348 269 Pfam Ribosomal protein L19 167 264 IPR001857 GO:0003735|GO:0005840|GO:0006412
Cla01g01348 269 PANTHER 39S RIBOSOMAL PROTEIN L19, MITOCHONDRIAL 63 266 - -
Cla01g01348 269 TIGRFAM rplS_bact: ribosomal protein bL19 168 263 IPR001857 GO:0003735|GO:0005840|GO:0006412
Cla01g01348 269 SUPERFAMILY Translation proteins SH3-like domain 166 264 IPR008991 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01348 K02884 RP-L19, MRPL19, rplS; large subunit ribosomal protein L19 - csv:101216309 387.111
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01348 Cla-Chr1:27015307 Cla10g00224 Cla-Chr10:2627927 4.86E-42 dispersed
Cla01g01347 Cla-Chr1:27007512 Cla01g01348 Cla-Chr1:27015307 8.05E-104 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g836 . . . . Bpe12g00672 . . . . Cmo18g00157 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00149 . . . . . . Bma08g00079 . . . . Cma18g00195 . Car18g00188 Cpe09g00999 . . . . . . . . Cla01g01348 Cam01g1383 Cec01g1411 Cco01g1508 Clacu01g1414 Cmu01g1317 Cre01g1225 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003020 1 1 2 2 2 2 2 2 2 1 2 2 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 8 3 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01348 Cla_Chr01 FPKM 4.051752 6.781397 9.484667 8.343939 2.106854 1.224311 1.408036 10.91855 10.722155 12.208623