Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01351 ATGGGAAAGATTGTGATGAATGCTCATTGGGATGGAAACCGGGAAGAGGATTGTGGAATTGTGAAAGTTGCAATATATTCAGCCGAGAGGGTCTGTTGCTGTTTTGTTCTTGAATGTTTGAAGGGTCTGTTTGATTTTTCTGCAGAGTTGGTGAGGGAGAGCGGCGATGGGGGTATCAATGGCCACCTTGATAGCACCGGGAAGTATGTCCGTTACACGACGGAGCAAGTGGAGGCTCTTGAGCGAGTCTATGCGGAATGTCCTAAACCAAGCTCTTTGCGCCGTCAGCAGCTGGTTCGTGATTGCCCCATTTTAGCCAACATCGAGCCCAAGCAGATCAAAGTCTGGTTCCAGAACCGCAGATGTAGAGAGAAACAAAGAAAAGAGGCTTCTCGTTTACAGTCGCTAAATAGTAAATTGACGGCCATGAACAAGCTGTTGATGGAGGAGAATGATAGGTTGCAGAAGCAAGTGTCTCAGCTTGTCTGTGAGAATGGGTATATGCGCCAACATTTGCAAACTGCTAATGCACCAACAGCAACAACTACTGATGCAGCTTGTGACTCGGTGGCTACTACCCCTCAGCATTCACTTAGAGATGCTAGTAGCCCTGCTGGACTCTTGTCTATTGCCGAGGAGATTTTGGCAGCCTTCCTGTCAAAGGCTATGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCAGATTCGGTGGGAATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCCGCTCGAGCTTGTGGTCTAATTGCAGAGATCCTAAAAGATCGCCCATCTTGGTTTCGTGATTGCCGGAGCCTTGAAGTCTTTACTACATTTCCCACTGGTGATGGTGGAACAATCGAACTTGTTTATACGCAGGTTTATGCCCCGACTACATTAGCACCTGCACGAGATTTTTGGACTCTAAGATACACCAGAACTTTAGAAAATGGTAATCTTGTGGTTTGTGAGAGATCGCTGTCTGGGTCTGGCACTGGGCCAAATGCAGCTTCTGCTTCTCAATTTGTGAGAGCTGAAATGCTTCCCAGTGGCTATTTGATTCGTCCATGCGAGGGCGGAGGTTCGATCATCCACATTGTAGACCATCTAAATCTTGAGCCTGGGGGTGTGCCAGAGGTAGTACGACCACTTTATGAATCATCAAAGGCCGTTGCGCAGAAAATGACCATAGCAGCTCTTCGCTACATTAGGCAAATCGCTCAAGAGACAAGTGGTGAAGTTGTATACAGTTTAGGCAGGCAACCAGCCGTTCTGCGAACTTTTAGCCAAAGATTAAGCAGAGGATTTAATGATGCTGTCAATGGATTCAATGATGATGGGTGGTCTTTGATCAATTGTGATGGAGCTGAAGATGTGACCCTTGCCATAAATTCAAGCAAGAATCTAAATACATCATATGATCCAGTCAATTCTCTTGCATTCCACGGTGGGATCCTTTGTGCAAAGGCTTCCATGCTTCTCCAAAATGTTCCTCCCATTGCTCTAATTCGCTTCTTGAGGGAGCATCGGTCCGAGTGGGCTGATTTCAATGTTGATGCCTACTCTGCTGCATCGCTAAAAACTGGCTTGTATGTATACCCGGGCATGAGACCGACGAGGTTTACAGGGAGTCAAATCATCATGCCACTCGGCCATACAATTGAACAAGAAGAGTTGCTTGAAGTTGTAAGACTTGAAAGCCACCCTCTTGCTCAAGAAGATGCTTTTATGTCCCGGGACGTTCATCTCTTGCAGGTGTGTACTGGAATCGATGAGAATGCTGTTGGGGCGTGTTCCGAACTTGTGTTTGCTCCCATCGATGAGATGTTTCCTGATGATGCTGTGCTGCTGGCATCTGGTTTCAGGATCATTCCATTACATTCTAAAACAAGTGACCCAAAAGATACATGGAACTCAAATAGGACTCTGGATCTCACGTCCATTCTTGAAGTTGGCTCATCTGCTTCTCAAGATGCTGCTGCTGCTGCATCAACTTCTAACTTCAGATCGGTTTTGACCATTGCTTTCCAGTTCCCGTTTGGCATCAACTCGCAGGATGACGTTGCAGCGATGGCTCGACAGTATGTCCGGAGTGTCATTTCAGCTGTGCAGAGGGTTGCAGTCGCCATATCACCCCCTAGTTTAAGCTCGTCGTCAGAGCCAAAGCAAACATCTGCCTGTCCAGAAGCGCTTACACTGGTTCGATGGGTCTGCCACAGCTACAGATGCCATACTGGAACAGAGCTCGTGCCATCAGACAGTTTGGATGGTGACTCGGTGTTGAAACATCTATGGAATCATCAGGATGCAATTCTGTGTTGTTCCCTCAAGTCACTGCCCCCAGTATTCATGTTTGCAAACCAAGCAGGCCTTGACATGTTGGAGACAACCTTAGTTGCCTTACAAGACATCACTTTGGATAAAATTTTTGGCGACTCGGTCCGCAAGGCTTTCTCTGATGTTTTTTCCAGCTTAATGAACCAGGGCTTTGCTTACATTCCTGCTGGAATTTGCATGTCAACAATGGGACGACATGCTTCCTTTGAACAGGCTGTTGCATGGAAAGTCCTTGCAGAAGATGAGTCCACCGTGCACTGTCTCGCCTTCTCCTTCGTCAACTGGTCGTTCCTGTGA 2652 47.36 MGKIVMNAHWDGNREEDCGIVKVAIYSAERVCCCFVLECLKGLFDFSAELVRESGDGGINGHLDSTGKYVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQHLQTANAPTATTTDAACDSVATTPQHSLRDASSPAGLLSIAEEILAAFLSKAMGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLIAEILKDRPSWFRDCRSLEVFTTFPTGDGGTIELVYTQVYAPTTLAPARDFWTLRYTRTLENGNLVVCERSLSGSGTGPNAASASQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEPGGVPEVVRPLYESSKAVAQKMTIAALRYIRQIAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLINCDGAEDVTLAINSSKNLNTSYDPVNSLAFHGGILCAKASMLLQNVPPIALIRFLREHRSEWADFNVDAYSAASLKTGLYVYPGMRPTRFTGSQIIMPLGHTIEQEELLEVVRLESHPLAQEDAFMSRDVHLLQVCTGIDENAVGACSELVFAPIDEMFPDDAVLLASGFRIIPLHSKTSDPKDTWNSNRTLDLTSILEVGSSASQDAAAAASTSNFRSVLTIAFQFPFGINSQDDVAAMARQYVRSVISAVQRVAVAISPPSLSSSSEPKQTSACPEALTLVRWVCHSYRCHTGTELVPSDSLDGDSVLKHLWNHQDAILCCSLKSLPPVFMFANQAGLDMLETTLVALQDITLDKIFGDSVRKAFSDVFSSLMNQGFAYIPAGICMSTMGRHASFEQAVAWKVLAEDESTVHCLAFSFVNWSFL 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27076751 27085874 - ClCG01G013660.2 Cla01g01351 264940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01351 883 SUPERFAMILY Bet v1-like 209 414 - -
Cla01g01351 883 ProSiteProfiles 'Homeobox' domain profile. 63 127 IPR001356 GO:0003677
Cla01g01351 883 SMART START_1 209 412 IPR002913 GO:0008289
Cla01g01351 883 SUPERFAMILY Homeodomain-like 66 130 IPR009057 -
Cla01g01351 883 Gene3D - 62 134 - -
Cla01g01351 883 Pfam Homeodomain 69 126 IPR001356 GO:0003677
Cla01g01351 883 Coils Coil 133 164 - -
Cla01g01351 883 Gene3D - 239 419 IPR023393 -
Cla01g01351 883 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 52 883 - -
Cla01g01351 883 SMART HOX_1 65 131 IPR001356 GO:0003677
Cla01g01351 883 Pfam MEKHLA domain 738 882 IPR013978 -
Cla01g01351 883 ProSiteProfiles START domain profile. 200 421 IPR002913 GO:0008289
Cla01g01351 883 Pfam START domain 210 410 IPR002913 GO:0008289
Cla01g01351 883 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 52 883 IPR044830 GO:0003700
Cla01g01351 883 CDD homeodomain 68 128 IPR001356 GO:0003677
Cla01g01351 883 CDD bZIP 120 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01351 Cla-Chr1:27076751 Cla02g02065 Cla-Chr2:35684957 0 dispersed
Cla01g01351 Cla-Chr1:27076751 Cla01g02453 Cla-Chr1:38229879 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60417 PF01852 START 2.00E-40 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01351 K09338 - cpap:110820480 1319.29