Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01365 ATGATTTCAAATTCCCAAATGTTTTCTCTTCCTTCACAAGATCCCTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGACAACCTTCTTTCTTCATATTCCCAATCAAGCAACTCTCTCCTTTATAACCTCTCAATTTTGAAGGAGAAACTCCACCAAATCCAATCTGTTGTCAACATAGCCATCTACAACCTTCAAAACTCAACTGAATCTCTGCCCCCGGCCTCGTCGCCAGTGGCGACTGCGGCCGTCAACTCTTTGATTCAAGAACTCATCATGGCTGCTTCCTCCATGTTGTTCACATGTCAACAGATGGATAACCTCGTCGTGAATGCCTCCTTACACAACAACAACGTCGATAACAACCTCCACGATCAGCACCACCACCGTCAAGGTCCCGTTGACGATGACAATCGACGATCCAACACCCTTCTAGACATGGCCAACGACCATCATCACCAACATCAGGATTGGTACAACATGACGACATCTACTAATTATAACAACAACGATAACAACAACAGTAGAATAACGACAACAAAAACAACACAAGATCATCGAAATTCGATCAATATCGTCGAGCTAGATGCTTCGGATCTTCTAGCAAAATACACCCATTATTGTCAAATTTGTGGGAAAGGGTTCAAGCGAGATGCCAACTTGAGAATGCACATGCGAGCGCACGGGGACGAGTACAAAGCAAGCGGGGCGTTGAGCAACCCAGAGAAGAGCCATAGAAGGGACTTGAATAATATAAGCAAGATGGGGACCAAATATTCATGTCCACAAGAAGGCTGCAGATGGAACCAAAAACATGTCAAGTTTCAACCATTGAAATCACTGATTTGTGTGAAAAATCACTTCAAAAGAACTCATTGCCCCAAAATGTATGTTTGCAAATTGTGTAGTAGGAAGAAATTTTCAGTGCTATCTGATTTGAGAACTCATGAGAAGCACTGTGGAGATGTGAAATGGCTATGTTCTTGTGGAACAACATTTTCCAGAAAAGATAAGCTGATGGGACATGTTGCTTTGTTTGTGGGGCATGCTCCAGCCATCGGTTCGTCGACAAAATTTTCGGGAAAACAGGAAGAACATCAGTATGTTCATTCGTTCTAA 1122 42.6 MISNSQMFSLPSQDPLVSSSNDHHETLDNLLSSYSQSSNSLLYNLSILKEKLHQIQSVVNIAIYNLQNSTESLPPASSPVATAAVNSLIQELIMAASSMLFTCQQMDNLVVNASLHNNNVDNNLHDQHHHRQGPVDDDNRRSNTLLDMANDHHHQHQDWYNMTTSTNYNNNDNNNSRITTTKTTQDHRNSINIVELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHRRDLNNISKMGTKYSCPQEGCRWNQKHVKFQPLKSLICVKNHFKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVALFVGHAPAIGSSTKFSGKQEEHQYVHSF 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27649044 27650398 + ClCG01G013810.2 Cla01g01365 264954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01365 373 ProSitePatterns Zinc finger C2H2 type domain signature. 209 229 IPR013087 -
Cla01g01365 373 MobiDBLite consensus disorder prediction 121 140 - -
Cla01g01365 373 PANTHER OS08G0562300 PROTEIN 23 367 - -
Cla01g01365 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 234 IPR013087 -
Cla01g01365 373 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 23 367 IPR044300 GO:0010044|GO:0010447
Cla01g01365 373 Pfam Zinc finger, C2H2 type 207 229 IPR013087 -
Cla01g01365 373 MobiDBLite consensus disorder prediction 1 22 - -
Cla01g01365 373 SUPERFAMILY beta-beta-alpha zinc fingers 205 232 IPR036236 -
Cla01g01365 373 MobiDBLite consensus disorder prediction 122 140 - -
Cla01g01365 373 Gene3D Classic Zinc Finger 181 265 - -
Cla01g01365 373 SMART c2h2final6 207 229 IPR013087 -
Cla01g01365 373 SMART c2h2final6 260 293 IPR013087 -
Cla01g01365 373 SMART c2h2final6 298 320 IPR013087 -
Cla01g01365 373 Gene3D Classic Zinc Finger 296 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01365 Cla-Chr1:27649044 Cla09g00973 Cla-Chr9:10230265 2.57E-77 dispersed
Cla10g01643 Cla-Chr10:32073533 Cla01g01365 Cla-Chr1:27649044 4.75E-22 dispersed
Cla01g01365 Cla-Chr1:27649044 Cla08g01505 Cla-Chr8:27861370 1.17E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60418 PF00096 zf-C2H2 9.50E-05 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01365 - - csv:101203636 644.81