Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g01365 | ATGATTTCAAATTCCCAAATGTTTTCTCTTCCTTCACAAGATCCCTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGACAACCTTCTTTCTTCATATTCCCAATCAAGCAACTCTCTCCTTTATAACCTCTCAATTTTGAAGGAGAAACTCCACCAAATCCAATCTGTTGTCAACATAGCCATCTACAACCTTCAAAACTCAACTGAATCTCTGCCCCCGGCCTCGTCGCCAGTGGCGACTGCGGCCGTCAACTCTTTGATTCAAGAACTCATCATGGCTGCTTCCTCCATGTTGTTCACATGTCAACAGATGGATAACCTCGTCGTGAATGCCTCCTTACACAACAACAACGTCGATAACAACCTCCACGATCAGCACCACCACCGTCAAGGTCCCGTTGACGATGACAATCGACGATCCAACACCCTTCTAGACATGGCCAACGACCATCATCACCAACATCAGGATTGGTACAACATGACGACATCTACTAATTATAACAACAACGATAACAACAACAGTAGAATAACGACAACAAAAACAACACAAGATCATCGAAATTCGATCAATATCGTCGAGCTAGATGCTTCGGATCTTCTAGCAAAATACACCCATTATTGTCAAATTTGTGGGAAAGGGTTCAAGCGAGATGCCAACTTGAGAATGCACATGCGAGCGCACGGGGACGAGTACAAAGCAAGCGGGGCGTTGAGCAACCCAGAGAAGAGCCATAGAAGGGACTTGAATAATATAAGCAAGATGGGGACCAAATATTCATGTCCACAAGAAGGCTGCAGATGGAACCAAAAACATGTCAAGTTTCAACCATTGAAATCACTGATTTGTGTGAAAAATCACTTCAAAAGAACTCATTGCCCCAAAATGTATGTTTGCAAATTGTGTAGTAGGAAGAAATTTTCAGTGCTATCTGATTTGAGAACTCATGAGAAGCACTGTGGAGATGTGAAATGGCTATGTTCTTGTGGAACAACATTTTCCAGAAAAGATAAGCTGATGGGACATGTTGCTTTGTTTGTGGGGCATGCTCCAGCCATCGGTTCGTCGACAAAATTTTCGGGAAAACAGGAAGAACATCAGTATGTTCATTCGTTCTAA | 1122 | 42.6 | MISNSQMFSLPSQDPLVSSSNDHHETLDNLLSSYSQSSNSLLYNLSILKEKLHQIQSVVNIAIYNLQNSTESLPPASSPVATAAVNSLIQELIMAASSMLFTCQQMDNLVVNASLHNNNVDNNLHDQHHHRQGPVDDDNRRSNTLLDMANDHHHQHQDWYNMTTSTNYNNNDNNNSRITTTKTTQDHRNSINIVELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHRRDLNNISKMGTKYSCPQEGCRWNQKHVKFQPLKSLICVKNHFKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVALFVGHAPAIGSSTKFSGKQEEHQYVHSF | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 27649044 | 27650398 | + | ClCG01G013810.2 | Cla01g01365 | 264954 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g01365 | 373 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 209 | 229 | IPR013087 | - | |
Cla01g01365 | 373 | MobiDBLite | consensus disorder prediction | 121 | 140 | - | - | |
Cla01g01365 | 373 | PANTHER | OS08G0562300 PROTEIN | 23 | 367 | - | - | |
Cla01g01365 | 373 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 207 | 234 | IPR013087 | - | |
Cla01g01365 | 373 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 23 | 367 | IPR044300 | GO:0010044|GO:0010447 | |
Cla01g01365 | 373 | Pfam | Zinc finger, C2H2 type | 207 | 229 | IPR013087 | - | |
Cla01g01365 | 373 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cla01g01365 | 373 | SUPERFAMILY | beta-beta-alpha zinc fingers | 205 | 232 | IPR036236 | - | |
Cla01g01365 | 373 | MobiDBLite | consensus disorder prediction | 122 | 140 | - | - | |
Cla01g01365 | 373 | Gene3D | Classic Zinc Finger | 181 | 265 | - | - | |
Cla01g01365 | 373 | SMART | c2h2final6 | 207 | 229 | IPR013087 | - | |
Cla01g01365 | 373 | SMART | c2h2final6 | 260 | 293 | IPR013087 | - | |
Cla01g01365 | 373 | SMART | c2h2final6 | 298 | 320 | IPR013087 | - | |
Cla01g01365 | 373 | Gene3D | Classic Zinc Finger | 296 | 346 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01365 | Cla-Chr1:27649044 | Cla09g00973 | Cla-Chr9:10230265 | 2.57E-77 | dispersed | |
Cla10g01643 | Cla-Chr10:32073533 | Cla01g01365 | Cla-Chr1:27649044 | 4.75E-22 | dispersed | |
Cla01g01365 | Cla-Chr1:27649044 | Cla08g01505 | Cla-Chr8:27861370 | 1.17E-24 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60418 | PF00096 | zf-C2H2 | 9.50E-05 | CL0361 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g01365 | - | - | csv:101203636 | 644.81 |