Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01387 ATGTCTCGCCGAGGCAGTGGTGGGGGCGGCGGCGGTCGTGGTTCAGGTGGTCGTGGGGGACAGCCGTCTCCGGCTATATCTCGCGGCGGCGGTGGAAGAGGTGGACGAGGCGGTGGAGGGAGAGATGGAGGTAGAGTAGGTCATCCAGCTTCTCAGCAGTTTCCTTCTTCGACTCCTCAGCCTAGTCCGGTTGCTTCCCCTCCTCCTCCCCAGACTTCTACGGGAGCATCTTCTTCATCCTCCTCAGGTACTGCTACTCACTCACAGCCCGAGGTTTCGAGGATTGAGGCACAAGTGGGGAAGATGACATTGACGCCGCAGAAAGTTCCGCCGTCTTCATCTAAAGATTTGGCTGTGGCGAAGAGGCCGGGATATGGAACCATTGGGGACAAAGTTGTTGTTCGAGCTAATCATTTTCTGGTTCATGTTGCAGACAAAGATCTCTACCATTACGATGTTTCCATTATACCTGAGGTTACATCCAAAAAGGTCTGCCGAGAAATTATAGACCAGCTTGCAAAAATGTATAGAGAATCTCATTTGGGTGGAAGATATATAGCATATGATGGTGGAAAAAGTGTTTATGTTGCTGGTCAACTTCCATTTTCGTCCAAAGAGTTCATGATTAAATTAGTCCGTAAAGATGATGCTGGGTCTTCCCAACCAACAAGGAAAGAACGCGAGTTCAAAGTGTCTATCAAATTTGCTTCCAAGCCAGACCTCCATCATCTACAACAGTTTTTACATGGACGGCAGCGAGATGCTCCTCAGGAGACTATACAAGTTCTTGATGTTGTTTTTAGAACAAAACCATCTTTCAAATACACAGTTGTTGGAAGGTCTTTTTTCTCGCTTACTTTGGGGGAACCCGGTGAACTGGGTAATGGTGTTGAGTACTGGAGGGGATATTACCAAAGTCTACGACCTGTACAAATGGGTCTCTCTTTGAATATAGATGTGTCAGCTAGGTCATTTTATGAACCAATATGTGTGACAGACTATGTTGCTAAACACTTCAACCTAAGAAATTTCTCGAAGCCAATATCTGATCAGGATTGTCGCAAGATCCGAAGGGTACTTAAAGGTGTGAAGGTGGCATTAACGTGTAGGGAGCATGCCAGGACCTACAAAATTACTGGGATATCATCAGAGCCTGTAAACAGATTAATGTTCACTCTTGATGATCAGAGAACCCGAATCTATGTTGCACAATACTTTCGTGAAAAATATGGTGTTGTGCTCAAATTTCCATCTCTACCGGCTATACAAGCTGGTAATGATGCGAAGCCCATCTATTTGCCTATGGAGCAGTTGGGGAAGGTGACTGAGGGCAGTTTCCTTATGTTCAAGATTAGGGCTGTTTGTAGGATTGTTGGTGGGCAAAGATATACCAAAAAATTGAATGAACGCCAAGTAACTGAGATGTTAAGAGCGACTTGTCAGAGGCCTTTGGACAGGGCAAACAGTATAAAGAAGATGGTTGAAAAGAACGATTATTCTAAAGATGAAACTGTTACGGATTTTGGCATTAATGTTGTACAACAGTTATGTGATGTTGATGCTCGTGTTTTGCCGTCCCCAATGCTCAAATATCATGAAACTGGCAAAGAATCGAGAGTTGATCCAAGGATGGGTCAATGGAATATGATCAATAAGAAAATGATCAATGGTGGTAGAGTTGATTATTGGGGCTGCGTGAACTTCTCTTCACGGTTGGATCCAGGCCTGCCATCCGAATTTTGCCACCAGTTGGTTAGCATGTGCAATAGCAAAGGAATGGTTTTCAACCCTACTCCGCTGTTTCCTGTACACACTGCACATGCAAATCAAATTGATGGTGTCCTTAGAGACATTCATAGTCGGTCTGTAAAAAGTCTGGGAGCCCAGGGCAAGTCTCTTCAGTTGCTCATAATCATTTTACCTGATGTTTCTGGTTCCTATGGGAAGATCAAAAGGATATGTGAGACCGAGCTTGGAATTGTTTCACAATGTTGCCAGCCTAGGCAGGCGCAAAAGCTAAACAAGCAGTACTTTGAAAATGTGGCCCTTAAAATTAATGTTAAGGTTGGGGGAAGAAACAATGTCCTTAATGATGCTATTCAGCGAAGAATTCCTCTTGTTACGGATCGGCCTACAATAATCATTGGAGCAGATGTAACACATCCACAACCAGGAGAGGACTCCAGTGCTTCAATAGCAGCTGTTGTTGCCTCTATGGACTGGCCTGAGGTAACGAAGTATAGAGGAATCGTTTCAGCTCAGGCTCACCGTGAAGAAATTATACAAGATTTGTACAAAGAGAGTCAAGATCCTCAGAAAGGATTGGTGCGTGCGGGAATGATTAGGGAGCTGTTCATTGCTTTTAGAAGGTCAACGAATATGAAACCGCACAGAATAATATTCTACAGGGATGGTGTAAGTGAAGGACAGTTCTCTCAAGTTCTATTTTATGAGGTGGATGCAATCAGGAAGGCATGTGCCTCGCTTGAAGATGGTTACCAGCCTCCAATAACCTTTGTAGTGGTGCAAAAGAGACATCATACCCGTCTTTTCCCCACTGGTCGGGAAACTGATCGAAGTGGAAACATCCTTCCAGGTACCGTTGTCGATACGAAAATTTGCCATCCAACTGAATTTGATTTCTACTTAAACAGCCATGCTGGCATTCAGGGGACAAGTAGACCAACACATTATCACGTTTTATATGATGAAAACAAATTCACTGCTGATGCAATGCAAATGCTTACGAATAATCTATGCTACACGTATGCAAGGTGCACACGGTCTGTTTCCATTGTTCCACCAGCATACTATGCCCATCTTGCAGCCTTTCGTGCTCGTTATTACATGGAGGGTGATTCATCCGACAGCGGTTCGACGAGTTCAGGTGGTGGGAATGTAGAAATTCAACGGCTGCCAAGCATAAAAGAAAATGTGAAGGATGTCATGTTTTACTGTTGA 2961 44.34 MSRRGSGGGGGGRGSGGRGGQPSPAISRGGGGRGGRGGGGRDGGRVGHPASQQFPSSTPQPSPVASPPPPQTSTGASSSSSSGTATHSQPEVSRIEAQVGKMTLTPQKVPPSSSKDLAVAKRPGYGTIGDKVVVRANHFLVHVADKDLYHYDVSIIPEVTSKKVCREIIDQLAKMYRESHLGGRYIAYDGGKSVYVAGQLPFSSKEFMIKLVRKDDAGSSQPTRKEREFKVSIKFASKPDLHHLQQFLHGRQRDAPQETIQVLDVVFRTKPSFKYTVVGRSFFSLTLGEPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPICVTDYVAKHFNLRNFSKPISDQDCRKIRRVLKGVKVALTCREHARTYKITGISSEPVNRLMFTLDDQRTRIYVAQYFREKYGVVLKFPSLPAIQAGNDAKPIYLPMEQLGKVTEGSFLMFKIRAVCRIVGGQRYTKKLNERQVTEMLRATCQRPLDRANSIKKMVEKNDYSKDETVTDFGINVVQQLCDVDARVLPSPMLKYHETGKESRVDPRMGQWNMINKKMINGGRVDYWGCVNFSSRLDPGLPSEFCHQLVSMCNSKGMVFNPTPLFPVHTAHANQIDGVLRDIHSRSVKSLGAQGKSLQLLIIILPDVSGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLNDAIQRRIPLVTDRPTIIIGADVTHPQPGEDSSASIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYKESQDPQKGLVRAGMIRELFIAFRRSTNMKPHRIIFYRDGVSEGQFSQVLFYEVDAIRKACASLEDGYQPPITFVVVQKRHHTRLFPTGRETDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMEGDSSDSGSTSSGGGNVEIQRLPSIKENVKDVMFYC 986
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28220177 28227843 - ClCG01G014010.2 Cla01g01387 264976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01387 986 SMART DUF1785_2 276 328 IPR014811 -
Cla01g01387 986 Gene3D - 703 986 IPR036397 GO:0003676
Cla01g01387 986 Pfam Piwi domain 637 950 IPR003165 GO:0003676
Cla01g01387 986 CDD PAZ_argonaute_like 328 436 - -
Cla01g01387 986 PANTHER PROTEIN ARGONAUTE 1A 56 971 - -
Cla01g01387 986 SMART Piwi_a_2 635 951 IPR003165 GO:0003676
Cla01g01387 986 ProSiteProfiles Piwi domain profile. 635 951 IPR003165 GO:0003676
Cla01g01387 986 Pfam PAZ domain 352 476 IPR003100 GO:0005515
Cla01g01387 986 MobiDBLite consensus disorder prediction 71 92 - -
Cla01g01387 986 MobiDBLite consensus disorder prediction 1 92 - -
Cla01g01387 986 Pfam Argonaute linker 2 domain 485 531 IPR032472 -
Cla01g01387 986 Gene3D paz domain 323 445 - -
Cla01g01387 986 Pfam Mid domain of argonaute 542 619 IPR032473 -
Cla01g01387 986 Gene3D - 523 698 - -
Cla01g01387 986 SUPERFAMILY PAZ domain 325 499 IPR036085 GO:0005515
Cla01g01387 986 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 56 971 - -
Cla01g01387 986 SUPERFAMILY Ribonuclease H-like 630 952 IPR012337 -
Cla01g01387 986 Pfam Argonaute linker 1 domain 278 327 IPR014811 -
Cla01g01387 986 ProSiteProfiles PAZ domain profile. 329 436 IPR003100 GO:0005515
Cla01g01387 986 Pfam N-terminal domain of argonaute 131 266 IPR032474 -
Cla01g01387 986 CDD Piwi_ago-like 503 950 IPR045246 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01387 Cla-Chr1:28220177 Cla04g01223 Cla-Chr4:27345092 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01387 K11593 - csv:116403995 1630.92