Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01388 ATGAGGAACTTTTTTCACTCAAAAAGCAGAAAGTTGCATCCATTACCTGGAAAAAAGAAAAGGAGTGAGTGGTTATTGAGTATAACATCTCCTGAGATGTCAAGATTTTCAAATGAAATGAAGCAGAAAGATGGTTATCTGATATACCCATCTCCTCTTTCTCCTTTTGATGGTGGCACTGATCCAAAATCAAATGATTCTACACCATCATCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCAGCAGCATCAGCCCAATCCTTCTTCTAGTTATAGTAATTCTAGCAGTCATCTTCTTCATCTCTGGTTTACTCCATTTGCTCGTTCGATTTCTTCTAAAAAGATCTTCCTCATCAATCTACCAATCCAATCGATACCCAGAAAGGCCTGGATCTCACACACTCCAAAGACAGCTCCAACAGCTCTTTCGCCTTCACGATTCAGGTCTCGACCAAGCCTTCATCGACGCTTTGCCAGTGTTCTTGTACAAAGATATTATGGGTTTAAAAGAGCCATTCGATTGCGCCGTTTGTCTCTACGAATTTTCCGACCAGGACAGGCTGAGATTGCTCCCTATCTGCAGCCATGCTTTTCATATCAATTGCATAGACACATGGCTACTCTCTAACTCCACATGTCCTCTCTGCCGAGCCACCCTTTTGGGCTCTACTTTTCCTTCCGAAAACCCTAATCCGAACGAGATTTTAGGGCAAGAAAACAGTTGTCACAGACAACCAGAAAACGCCGTTTCTGGAGATCATCAGAAACAAGCAACAACATTGGAGGAATCTACAGGGGAAATGAGAGTGTTGTCCGTGAGACTCGGGAAGTTCAAGAGAATAAACAGCGAAGAAGATGATGATGAAGAACAAATAGAAGAGAAAGGAGAGAGCAGTAGCCAAAATAACCTAAACGCGAGAAGATGCTACTCAATGGGAACTTACCAATACGTTGTTGGAGATTCAGATTTACAGGTGATGAAGGAGAAATTAAACCCTGAAAATCTTCGGGGAAATGGGGAAATAGAAGGGAAGAAAATCAGTGGGAGAAGTAAAGGGGAAAGTTTCTCGGTATCGAAGATTTGGCAATGGTCGACGAAGAGTGGATTGCCAATTCCAAGCAGCTCAAACAATCAATGGAAGCCGGAACTTGTCTGA 1161 42.29 MRNFFHSKSRKLHPLPGKKKRSEWLLSITSPEMSRFSNEMKQKDGYLIYPSPLSPFDGGTDPKSNDSTPSSSSSSSSSSSSFSSISPILLLVIVILAVIFFISGLLHLLVRFLLKRSSSSIYQSNRYPERPGSHTLQRQLQQLFRLHDSGLDQAFIDALPVFLYKDIMGLKEPFDCAVCLYEFSDQDRLRLLPICSHAFHINCIDTWLLSNSTCPLCRATLLGSTFPSENPNPNEILGQENSCHRQPENAVSGDHQKQATTLEESTGEMRVLSVRLGKFKRINSEEDDDEEQIEEKGESSSQNNLNARRCYSMGTYQYVVGDSDLQVMKEKLNPENLRGNGEIEGKKISGRSKGESFSVSKIWQWSTKSGLPIPSSSNNQWKPELV 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28264637 28268082 - ClCG01G014020.2 Cla01g01388 264977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01388 386 MobiDBLite consensus disorder prediction 332 357 - -
Cla01g01388 386 MobiDBLite consensus disorder prediction 245 266 - -
Cla01g01388 386 SUPERFAMILY RING/U-box 155 222 - -
Cla01g01388 386 MobiDBLite consensus disorder prediction 47 82 - -
Cla01g01388 386 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 33 380 - -
Cla01g01388 386 Pfam Ring finger domain 175 218 IPR001841 -
Cla01g01388 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 33 380 - -
Cla01g01388 386 CDD RING-H2_PA-TM-RING 175 218 - -
Cla01g01388 386 ProSiteProfiles Zinc finger RING-type profile. 176 218 IPR001841 -
Cla01g01388 386 MobiDBLite consensus disorder prediction 332 351 - -
Cla01g01388 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 223 IPR013083 -
Cla01g01388 386 SMART ring_2 176 217 IPR001841 -
Cla01g01388 386 MobiDBLite consensus disorder prediction 58 82 - -
Cla01g01388 386 MobiDBLite consensus disorder prediction 283 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01388 - - - csv:101221418 550.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01388 Cla-Chr1:28264637 Cla06g01284 Cla-Chr6:26198480 1.58E-57 dispersed
Cla01g01388 Cla-Chr1:28264637 Cla05g02525 Cla-Chr5:36605315 1.51E-79 wgd
Cla01g01388 Cla-Chr1:28264637 Cla09g01840 Cla-Chr9:36066620 1.17E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0138 Cone16ag0916 Lsi02g00357 Csa01g00833 Chy12g01285 Cme12g01710 . . . . . . . . Sed08g2492 . . . Cma18g00156 . Car18g00149 Cpe09g01038 . Bhi08g01585 Tan05g2030 Cmetu12g1860 Lac10g0429 Hepe07g2243 . . Cla01g01388 Cam01g1447 Cec01g1483 . Clacu01g1470 Cmu01g1365 Cre01g1282 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013813 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01388 Cla_Chr01 FPKM 21.312071 19.899588 22.066122 21.544821 22.461037 20.969675 24.033638 25.76631 25.632509 27.39016