Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01390 ATGAGCTCGGAGGAACCTAATTTGGATGAGTTCTTCGTAGAGAAGAAGCGCGCGAGAAACCCTTTGGTCCCCGTCGGTGCACTTGTCACTGCTGGGGTTCTCACTGCTGGATTAATAAGCTTTAGACAAGGCAACTCTCAGTTGGGGCAAATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGTGCTACAGTGGCACTGATGGTTGGCACGGCTTTCTACTATGGAGAGAATCCTTGGCGGTCGAGTTAA 249 50.6 MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS 82
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28291355 28292581 - ClCG01G014050.1 Cla01g01390 264979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01390 82 ProSiteProfiles HIG1 domain profile. 1 82 IPR007667 -
Cla01g01390 82 PANTHER HIG1 DOMAIN FAMILY MEMBER 2A 3 78 - -
Cla01g01390 82 PANTHER HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED 3 78 - -
Cla01g01390 82 Pfam Hypoxia induced protein conserved region 20 69 IPR007667 -
Cla01g01390 82 Gene3D - 20 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01390 - - - csv:101220872 157.532
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g708 . Blo16g00214 . . . . . . . Cmo18g00120 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0120 . . Lsi02g00354 Csa01g00830 . Cme12g01713 . . . . . . . . Sed08g2490 . . . . . Car18g00146 Cpe09g01041 . Bhi08g01580 Tan05g2034 Cmetu12g1497 Lac10g0426 . . . Cla01g01390 Cam01g1451 Cec01g1486 . Clacu01g1475 Cmu01g1370 Cre01g1285 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009375 0 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 2 1 1 3 3 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01390 Cla_Chr01 FPKM 2.678853 2.485031 4.747698 4.395445 8.908477 7.284426 10.545145 3.272277 3.373152 3.565145