Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01394 ATGACTTTCCCTTTCCCATTACTTTTCCTCATTATTATCACCATCTCCTTTTCCCTCCCCTTCCCCTCTCTTGTTCACTCCAAACTCACCCTTGGTTATTACCAAAACACCTGTCCCGACTTCGAGAAGATCATTCGTGAAACTGTCACCAATAAACAAATCACCAGCCCTGTCACGGCCGCTGGAACCCTTCGCCTCTTCTTCCACGACTGCATGGTTGATGGTTGCGACGCCTCCATCCTCATTTCCTCCAACTCCTTCAACCAAGCCGAGCGTGAGGCTGAAATCAACCATTCCCTCTCTGGTGACGCCTTCGACGTCGTCGTCCATGCTAAGACCAACCTCGAACTTGCTTGCCCTGGCATTGTCTCTTGTTCCGACATCTTGGCACAGGCAACTCGAGATTTAGTGGTGATGGTGGGAGGGCCATTCTACAACGTTCGATTGGGGAGAAAAGATGGAATGTTATCAAAAGTAGAAAACGTGGAAGGGAACCTTCCAAAAGTGGACTTCTCAATAGACAAACTCATCGATTTCTTCACCCAAAGAGGCTTCACCATCCAAGAACTAGTCGCCCTCTCCGGAGGGCACACCATCGGCTTCTCCCACTGTAAGGAATTCTCCGACCGCCTCTTTAACTTCAACGCCATGTCACCCACCGACCCTGACATTTACCCCAAATTTGCCGAAAAGCTCAAAGCCATGTGTGCCAATTACCTCACAGACACTGCCATGTCAGCTTTCAATGACGTCATGACACCTGGCAAATTCGACAACATGTACTTCCAGAATCTTCCACGTGGCCTTGGCCTACTCGCTACTGACAACGCCCTCTATAAAGACCCTAGGACCAAGCCGTTTGTGGATCTTTACGCCGTTAATCAAACGGCATTTTTTAAGGACTTTGCTCATGCAATGGAGAAGCTTAGCGTTTACGGCGTGAAGACGGGAAGGAAAGGGGAGGTTCGACGAAGGTGTGACCTCTTTAATTCCATTCAGACATGA 1005 49.05 MTFPFPLLFLIIITISFSLPFPSLVHSKLTLGYYQNTCPDFEKIIRETVTNKQITSPVTAAGTLRLFFHDCMVDGCDASILISSNSFNQAEREAEINHSLSGDAFDVVVHAKTNLELACPGIVSCSDILAQATRDLVVMVGGPFYNVRLGRKDGMLSKVENVEGNLPKVDFSIDKLIDFFTQRGFTIQELVALSGGHTIGFSHCKEFSDRLFNFNAMSPTDPDIYPKFAEKLKAMCANYLTDTAMSAFNDVMTPGKFDNMYFQNLPRGLGLLATDNALYKDPRTKPFVDLYAVNQTAFFKDFAHAMEKLSVYGVKTGRKGEVRRRCDLFNSIQT 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28330345 28331605 + ClCG01G014090.2 Cla01g01394 264983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01394 334 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 SUPERFAMILY Heme-dependent peroxidases 29 330 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Cla01g01394 334 Pfam Peroxidase 47 293 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 PANTHER PEROXIDASE 41 7 334 - -
Cla01g01394 334 Gene3D Peroxidase, domain 2 167 309 - -
Cla01g01394 334 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Cla01g01394 334 ProSiteProfiles Plant heme peroxidase family profile. 28 330 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 Gene3D - 32 330 - -
Cla01g01394 334 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g01394 334 CDD secretory_peroxidase 28 329 IPR033905 GO:0004601|GO:0042744
Cla01g01394 334 PANTHER - 7 334 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01394 Cla-Chr1:28330345 Cla10g01386 Cla-Chr10:28962334 1.79E-133 dispersed
Cla03g00743 Cla-Chr3:9015047 Cla01g01394 Cla-Chr1:28330345 5.71E-10 transposed
Cla01g01394 Cla-Chr1:28330345 Cla06g01637 Cla-Chr6:29893824 2.47E-160 wgd
Cla01g01394 Cla-Chr1:28330345 Cla09g01824 Cla-Chr9:35882966 1.22E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01394 K00430 - csv:101220163 585.489