Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01396 ATGGTCGGCCATGGCAATCACAGGCTGAAACTCTCCATCTTCCACCACCGATCTTCCTCAGACTCCAAACCCGAACGCCCAAAAGAGTATCCCGAAGAGTACCTCTGCCCAATTTCTAAGTCTTTAATGGCGGACCCAGTTGTCGTCTCCTCTGGTCACACCTTCGAGCGTCTCTCTGTTCAAGTTTGTCAAGATTTGGGGTTTTCGCCCAAGCTTGAAGAAGATGGTTCAAGGCCGGATTTCTCCTCTGTTATTACCAACAGAAACATGAGATTCACTATTCTCAAATGGTGCGATAATAACGGAATCGAACATCCACAACCCCCTGATTACAGCTCCATTGAACTCATTGTTCGTCGATTAATGGAGAAGCAGAGGCAGGAGAATCGATTCGAAGCTTCTGATAGCGAGTTGATTAGGGGCGTCGCCGATAAACCGCAGGGAGTTGCTGTTCATGCGACCACCGAGGTTGGGCTACGACTCAACCGATTTCAACTCGACTCGCCGCCGCAGAAGGAGGAGATCGTACGAGAAAGTACTATTTTGCCCTTCAAAACGCAACCCTCTAGTTATGCTGCTCATTCTTCTTCCTCTTCCCATGGAAGCTTCGATAGAGATCCTAATCACAGAGGATATTCTGATTCGTATTCCCCAAATTCAGAAGAAGAATCTATACTCATTTTGAAATTCAGAAGCAACGATGAATTCGAGCAACGAGAAGGAGTGATATCCCTAAGAAAATTAACTAAATCCAACGAATCGATTAGGGTTTCTTTATGCACAAAGGAATTCCTCGCCGCCCTACTTCCTTTGGTTTTGTCCCGATCTACAAATATCCAGATCAACGCAGTAGCTTCCGTCGTGAATCTCTCTCTCGAGAAACCCAACAAATTGAAGATCGTACGGGCAGGATTTGTTCCGCCATTAATCGACGTTTTAGACGGCAGAAGCGCCGAAGCTCAAGAACACGCCGCCGGTGCTCTGTTCAGTTTATCGTTAGACGACGAGAACAAAATGGCGATTGGAATTCTCGGCGCGTTACCGGTGCTGATGAATACGCTCCGAGCCGACAGCGAGAGAACGAGGAACGATTCAGCTCTTTGTTTGTACCATTTGACACTAAACCCTAGCAACCGAGTTAAACTGGTGAAACTCGGCGCCGTACCGATTCTGCTGTCGTTGACGAGAATCGAAGGTTGTGCGAGCCGAATACTTCTGATTCTGTGCAATATCGCGGCCTCTGTGGACGGGAGATCGGCGATGCTGGATGCGAATGCGGTGGGTTGTTTGGTGGAGATATTGAAGGAGAAGGACATTGATTCCGAGTCGACTCGGGAGAATTGTGTGGTGGCGCTTTACGCACTGAGTCAAGGAGGATTCCGATTCAAAGGATTGGCGAAGGAGGCCGGCGCGGTGGAGGTTCTGAGAGAGGTTGAAGAGAGGGGAAGCGAGCGGGCAAGGGAAAAAGCCAAGAGGATTTTGCAGATGATGAGAACCGGCGGAAGCGGTTCGGTCGAGATTGAAGGCGTCGGCCGAAATGGGCTCGACGCTGGTGGAGTCAGCTGGACCGGTCGGGTTGGTGCTGGCTTGAACCGATTTGGAAGCCGAAGTGTCGAATGGTGTGGTTCATCGGATCTGGATCTGACAGTTAAATGCTTGTTCGAATCTAGAAGTCGAAGTATCGAACGATGGTTGATGGCAGAACGACATGGAAATGATGGGCTCACCGGCTCAGATCTGGAAGTCGAACATGAACAACGTGTCGACGAGGTTGCTGTGGTGTGGCTCGTTGTTGTCAAAAGTCGAGCGGTGTTGGCGACTGGCATTGGGAGCCCAGCGGGCCACGGCTATAAAGTTGAAGTGAAGAGGAGAAAGTGGATGTGGATGGAATAA 1893 49.71 MVGHGNHRLKLSIFHHRSSSDSKPERPKEYPEEYLCPISKSLMADPVVVSSGHTFERLSVQVCQDLGFSPKLEEDGSRPDFSSVITNRNMRFTILKWCDNNGIEHPQPPDYSSIELIVRRLMEKQRQENRFEASDSELIRGVADKPQGVAVHATTEVGLRLNRFQLDSPPQKEEIVRESTILPFKTQPSSYAAHSSSSSHGSFDRDPNHRGYSDSYSPNSEEESILILKFRSNDEFEQREGVISLRKLTKSNESIRVSLCTKEFLAALLPLVLSRSTNIQINAVASVVNLSLEKPNKLKIVRAGFVPPLIDVLDGRSAEAQEHAAGALFSLSLDDENKMAIGILGALPVLMNTLRADSERTRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSLTRIEGCASRILLILCNIAASVDGRSAMLDANAVGCLVEILKEKDIDSESTRENCVVALYALSQGGFRFKGLAKEAGAVEVLREVEERGSERAREKAKRILQMMRTGGSGSVEIEGVGRNGLDAGGVSWTGRVGAGLNRFGSRSVEWCGSSDLDLTVKCLFESRSRSIERWLMAERHGNDGLTGSDLEVEHEQRVDEVAVVWLVVVKSRAVLATGIGSPAGHGYKVEVKRRKWMWME 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28374684 28383006 - ClCG01G014110.2 Cla01g01396 264985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01396 630 MobiDBLite consensus disorder prediction 187 202 - -
Cla01g01396 630 Pfam U-box domain 31 98 IPR003613 GO:0004842|GO:0016567
Cla01g01396 630 SUPERFAMILY ARM repeat 227 497 IPR016024 -
Cla01g01396 630 SUPERFAMILY RING/U-box 16 108 - -
Cla01g01396 630 ProSiteProfiles U-box domain profile. 29 104 IPR003613 GO:0004842|GO:0016567
Cla01g01396 630 Gene3D - 219 399 IPR011989 -
Cla01g01396 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 106 IPR013083 -
Cla01g01396 630 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 504 - -
Cla01g01396 630 Gene3D - 400 501 IPR011989 -
Cla01g01396 630 MobiDBLite consensus disorder prediction 187 218 - -
Cla01g01396 630 SMART Ubox_2 33 97 IPR003613 GO:0004842|GO:0016567
Cla01g01396 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 341 IPR000225 GO:0005515
Cla01g01396 630 SMART arm_5 334 374 IPR000225 GO:0005515
Cla01g01396 630 SMART arm_5 414 457 IPR000225 GO:0005515
Cla01g01396 630 SMART arm_5 375 413 IPR000225 GO:0005515
Cla01g01396 630 SMART arm_5 293 333 IPR000225 GO:0005515
Cla01g01396 630 Pfam Armadillo/beta-catenin-like repeat 295 332 IPR000225 GO:0005515
Cla01g01396 630 PANTHER U BOX DOMAIN-CONTAINING 1 504 - -
Cla01g01396 630 CDD RING-Ubox 35 71 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01396 Cla-Chr1:28374684 Cla07g00605 Cla-Chr7:11031387 1.34E-10 dispersed
Cla01g01396 Cla-Chr1:28374684 Cla06g01636 Cla-Chr6:29881997 1.33E-179 wgd
Cla01g01396 Cla-Chr1:28374684 Cla09g01823 Cla-Chr9:35880803 9.66E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01396 - - csv:101221183 915.22