Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01398 ATGCATGGGCTGATAGAAAGAGGAACTAGAAATAGAGGTCAATTAAAGGCTGTTTACAACCATTTCCTACGTTTCATGTTCTCCAAAATTATACAGAGAAGAAACCAAAGTGGGCCATTTCTTGTCTCTCCCACTTTTTGCCAACAGAAAAGAAAGAAAGAAAAATCATCTATAAAAAGTTCCCCCAAGTCATCATCTGCCTTGAACAATCACTGCTTCCAAATGGGAATTATGGAATACCATCAAACTTTTCATAATTCCAACACATATTTTGATCAATCTTACTCTTCTTCTTCTTCTTCTTCTTCATGTCTCACTACTTTCAAAGGCCATTCTTCTTACATCTCTTCTCTAACTCTCGCCGGAAAATTCCTCTACTCTGGTTCCTCCGACAAAGAAATCCGATCATGGAGACGAAACCCATCACAAAACTGTGAAGAAAACCAGGAAGAGTTTCAGAACACTATGGTTACAGCCGGACATGGCGCAGTGAAATCCCTTGTGGTTTCATCTGACAAACTTTACAGTGCCCATCAAGACCACAAAATTCGAGTTTGGAAAATCTCTAACGATTACGATCACCATCAAAAGTACACACGTTTAGCTACTCTCCCGACGCTCGGCGATCGGACGGCCAGGCTTTTGACACCCAATAATCAAGTCCAGATCCGACGGCACAAGAAATGCACTTGGGTTCATCATGTTGATACCGTTTCAGCTCTTGCTCTGTCAAACGACGAGTCGCTTCTCTATTCCGTCTCGTGGGATCGGACCCTCAAAATCTGGCGGACTTCCGATTTTAAATGCTTGGAGTCCATCACCGGAGCTCACGACGATGCGATAAACGCCGTCGCGCTCGCCGGAGACGGTGACGTGTATACTGGATCGACGGACAAGAGGATCAAAGTCTGGAGGAAAAACCCAGATGGGAAAAGGCATTTTTTGGTCCAAACACTCGAGAAACACAGCTCCGGAATTAATGCGTTGGCTCTCGCCGGCGATGGGTTGGTTTTATTTTCCGGCGCCTGCGACAAGTCGGTTTTGGTTTGGGAGAAGGAGGAAGGGGGTGGGTTAATGGAGTTGGTGGGTGTGTTGAGAGGCCATTCGAAGGCCATATTGTGTTTGGCTGTGGTGTTGGATTTGGTTTGTAGTGGTTCGGCGGACAAGACGATCAGAATTTGGAAGAAGGTCGTCGCCGGGAATTATGTGTGTTTGAGGGTTTTGGAAGGGCATAACGGTCCCGTCAAGTGTTTGGCGGCGGCGGTTGATCGGTGCAACCAAACCGACATGTCGTTTATGGTTTATAGTGGTGGTTTGGATTGTGATATCAAGGCGTGGCAGATTTCTGTTCCTCTTGTTTAA 1362 45.89 MHGLIERGTRNRGQLKAVYNHFLRFMFSKIIQRRNQSGPFLVSPTFCQQKRKKEKSSIKSSPKSSSALNNHCFQMGIMEYHQTFHNSNTYFDQSYSSSSSSSSCLTTFKGHSSYISSLTLAGKFLYSGSSDKEIRSWRRNPSQNCEENQEEFQNTMVTAGHGAVKSLVVSSDKLYSAHQDHKIRVWKISNDYDHHQKYTRLATLPTLGDRTARLLTPNNQVQIRRHKKCTWVHHVDTVSALALSNDESLLYSVSWDRTLKIWRTSDFKCLESITGAHDDAINAVALAGDGDVYTGSTDKRIKVWRKNPDGKRHFLVQTLEKHSSGINALALAGDGLVLFSGACDKSVLVWEKEEGGGLMELVGVLRGHSKAILCLAVVLDLVCSGSADKTIRIWKKVVAGNYVCLRVLEGHNGPVKCLAAAVDRCNQTDMSFMVYSGGLDCDIKAWQISVPLV 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28415235 28416862 - ClCG01G014125.1 Cla01g01398 264987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01398 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 351 - -
Cla01g01398 453 Gene3D - 94 202 IPR015943 GO:0005515
Cla01g01398 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 304 IPR001680 GO:0005515
Cla01g01398 453 Gene3D - 203 451 IPR015943 GO:0005515
Cla01g01398 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 272 IPR001680 GO:0005515
Cla01g01398 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 231 262 - -
Cla01g01398 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 360 IPR001680 GO:0005515
Cla01g01398 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 137 IPR001680 GO:0005515
Cla01g01398 453 SUPERFAMILY WD40 repeat-like 102 448 IPR036322 GO:0005515
Cla01g01398 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 365 395 - -
Cla01g01398 453 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 74 451 - -
Cla01g01398 453 CDD WD40 104 447 - -
Cla01g01398 453 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 74 451 IPR045182 -
Cla01g01398 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 365 395 IPR001680 GO:0005515
Cla01g01398 453 SMART WD40_4 101 138 IPR001680 GO:0005515
Cla01g01398 453 SMART WD40_4 266 305 IPR001680 GO:0005515
Cla01g01398 453 SMART WD40_4 224 263 IPR001680 GO:0005515
Cla01g01398 453 SMART WD40_4 312 351 IPR001680 GO:0005515
Cla01g01398 453 SMART WD40_4 358 395 IPR001680 GO:0005515
Cla01g01398 453 SMART WD40_4 151 187 IPR001680 GO:0005515
Cla01g01398 453 SMART WD40_4 401 447 IPR001680 GO:0005515
Cla01g01398 453 Pfam WD domain, G-beta repeat 360 395 IPR001680 GO:0005515
Cla01g01398 453 Pfam WD domain, G-beta repeat 153 187 IPR001680 GO:0005515
Cla01g01398 453 Pfam WD domain, G-beta repeat 316 350 IPR001680 GO:0005515
Cla01g01398 453 Pfam WD domain, G-beta repeat 404 446 IPR001680 GO:0005515
Cla01g01398 453 Pfam WD domain, G-beta repeat 232 262 IPR001680 GO:0005515
Cla01g01398 453 Pfam WD domain, G-beta repeat 103 137 IPR001680 GO:0005515
Cla01g01398 453 Pfam WD domain, G-beta repeat 268 304 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01398 - - - bhj:120083493 766.533
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g01398 Cla06g01714 CCT
Cla01g01398 Cla06g01714 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01398 Cla-Chr1:28415235 Cla02g01286 Cla-Chr2:26840242 5.79E-10 dispersed
Cla01g01398 Cla-Chr1:28415235 Cla05g02616 Cla-Chr5:37377138 4.26E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g871 . . . . . Bpe13g00263 . . . . . . . . . . . Bhi02g00576 Tan09g2327 Cmetu02g1365 . . . . Cla06g01714 . . Cco06g1956 . . Cre06g2615 . . . . . . . . . . . . . . . . . Cmo10g00081 . . . . . . . . . . . . . . Cla01g01398 Cam01g1460 Cec01g1499 . Clacu01g1484 Cmu01g1379 Cre01g1294 . Csa01g00089 Chy02g02631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013452 1 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 0 1 1 1 1 1 0 0 1 2 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01398 Cla_Chr01 FPKM 22.579437 30.17631 17.273209 21.498783 14.824094 21.235361 18.326479 9.136196 8.325783 11.164631