Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01399 ATGTTTCAAAGAATCATTAATCGAAGAGTAAACAAGACGAAGACGAAGGTTGTTTCTCTCCATGTTTCCCCACCGAAACCTACCTTCTTCCTTTCATGTCGCAACTTCACTTCCCAATCTAGCTCCGCCCTAGACACCGCCACCGCCGCCGCGGATATCGCCAATCTTGTCCTCGAATCTGACCCCAAAAGCTTGAGAGGATCCCTCCATGGATTACAAGTTCAATTTACCCCTGAACTTGTGGACAAGGTTCTCAAGCGCCTTTGGTTCCATGGACCGAAAGCGCTGCAATTCTTCAAACACCTTGAGTACCATCCATCTTATGCCCATTCCTCGTCTTCCTTTGACCATGTCATCGACATCGCAGGCCGTATGCGCGACTACAAGACCGTATGGGCTCTAGTGGCTCGAATGCGATCTCGCCGGATTGGACCCAGTTCAAAAACCTTCGCAATTATAGCTGAGAGGTTCGTCGGCGCTGGAAAACCAGACAGAGCAATCAAGGTTTTCTTGTCGATGCGGGAGCATGGCTGTCGTCAGGACCTGCATTCGTTTAACACCATTCTCGACATTCTCTGTAAGTCAAAACGTGTAGAAATGGCTTACAACAATCTGTTTAAGGTTTTGAGAGGAAAATTTAAGGCTGATGTTGTTAGTTATAACATAATTGCAAATGGGTGGTGCTTGATTAAGCGTACACCCAAAGCGTTGGAGGTTTTGAAGGAGATGGTGGAAAGAGGTTTAACTCCAACTATTACTACTTACAATATAGTTTTAAAAGGGTATTTTAGAGCTGGTCAGATTAAGGAAGCTTGGGAATTCTTTTTGCAAATGAAAGAAAGGGAAGTTGAAATTGACGTTGTTACTTATACTACTATGGTTCATGGGTTTGGTGTTGTTGGTGAAATTAAAAGGGCTCGAAAGGTTTTCGACGAGATGGTTGGCGAAGGGGTTCTTCCTTCAACAGCAACTTACAATGCTATGATTCAGGTTTTGTGTAAGAAAGACAGTGTGGAGAATGCAGTATTGTTGTTTGAGGAGATGATTAAAAAGGGTCATGTGCCAAATTTGACCACTTATAACGTGGTTATAAGAGGATTGTGTCATGCGGGTAATATGGAAAAGGCTATGGAGTTTATGGAGAGAATGAAAACTGATGGGTGTGAGCCAAATGTTCAGACATATAATGTCGCTATTCGGTATTTTTGTGATGCTGGTGACATAGAAAAGGGGTTGAATATGTTTGAGAAGATGGGGCAGGGGAGCTGTTTACCAAATTTGGATACGTATAATGTTTTGATTAGTGCAATGTTTGTGAGGAAAAAGTCTGAAGATTTAGTGGCTGCTGGGAAGCTGTTGCTTGAGATGATTGATAGAGGATTCCTCCCTCGAAAGTTCACTTTCAATCGAGTTCTCAATGGTCTTTTGCTGACGGGTAATCAAGGTTTTGCAAATGAGATTTTGAGATCGCAGAGCAAATGTGGTCTTTCAGTGCCTTCATCTGATCTTGTTGTGAAGCTGGTCACCTCAGAACCCGTTCCATTCTTCCTGAAGATGTCAAACAAGATTTTGAACTACACCTGTGGATCCGGAAGTGTTTTAATGGTTTATGGATGGACAAGACAAGATAATGTGGCAACTATCAGAAGCAGAGCAGTCGATTGCCGAAGTCTTCACATCAAACATATCTGCGGCGGCGGCGACGACGACGACTTCATGGCGGCTCTGCCATCCTCTTCCGCTGTACCGGATTCTTCTTCCTCCAGACACCATACCTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGTTCAAACTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGGCTTGACGATGCAGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTACGATATTGTGAATGTTTTGGAGAGCGTCGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAGGGAGAATTGCAGTGCATCCGATGGTAACGATTATGCGAAAGTATCGGATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACCGGAAGCCAGACCTCAACTGCAGCTGTGCCAAAATCATCTTCATCATCATTAAAAGCCGACAATAGAAGGGAAAAGTCTTTGGCGCTCCTGACTCAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTTTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTAAGGAGGCTATATGACATTGCAAATGTGCTGTCTTCTATGAATCTGATCGAAAAGACCCATACAACAGATACTAGAAAGCCTGCTTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCGTTCTTACAGAGTCCAGAAAAAGAGCATTTGGAACTGATGTAACTAATGTCAGTTATAAGAAGACTAAAGCTGAAAGTTCAGCGTATCAGGGTTTAAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGTGAGAATTCTTCGCAAGAGGATAGCCAAAATAGTCAGGATCAAGAATGCGAACGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTAACAGTAGCTAAAGTTGGTGTCTCAGACAATAACAATACGAAGCGGACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGTCCTCAGTATCACAATCAAGCCTTAAACGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGA 2862 43.19 MFQRIINRRVNKTKTKVVSLHVSPPKPTFFLSCRNFTSQSSSALDTATAAADIANLVLESDPKSLRGSLHGLQVQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSSSSFDHVIDIAGRMRDYKTVWALVARMRSRRIGPSSKTFAIIAERFVGAGKPDRAIKVFLSMREHGCRQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNIVLKGYFRAGQIKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFDEMVGEGVLPSTATYNAMIQVLCKKDSVENAVLLFEEMIKKGHVPNLTTYNVVIRGLCHAGNMEKAMEFMERMKTDGCEPNVQTYNVAIRYFCDAGDIEKGLNMFEKMGQGSCLPNLDTYNVLISAMFVRKKSEDLVAAGKLLLEMIDRGFLPRKFTFNRVLNGLLLTGNQGFANEILRSQSKCGLSVPSSDLVVKLVTSEPVPFFLKMSNKILNYTCGSGSVLMVYGWTRQDNVATIRSRAVDCRSLHIKHICGGGDDDDFMAALPSSSAVPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLTESRKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNTKRTHDWESLSSTFRPQYHNQALNELFSHYVEAWKSWYSEAVKKPIQIS 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28423998 28435305 - ClCG01G014130.1 Cla01g01399 264988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01399 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Cla01g01399 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Cla01g01399 953 TIGRFAM PPR: pentatricopeptide repeat domain 359 392 IPR002885 -
Cla01g01399 953 TIGRFAM PPR: pentatricopeptide repeat domain 288 321 IPR002885 -
Cla01g01399 953 TIGRFAM PPR: pentatricopeptide repeat domain 254 287 IPR002885 -
Cla01g01399 953 TIGRFAM PPR: pentatricopeptide repeat domain 218 251 IPR002885 -
Cla01g01399 953 TIGRFAM PPR: pentatricopeptide repeat domain 394 426 IPR002885 -
Cla01g01399 953 TIGRFAM PPR: pentatricopeptide repeat domain 324 356 IPR002885 -
Cla01g01399 953 TIGRFAM PPR: pentatricopeptide repeat domain 149 181 IPR002885 -
Cla01g01399 953 Gene3D Tetratricopeptide repeat domain 207 313 IPR011990 GO:0005515
Cla01g01399 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Cla01g01399 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Cla01g01399 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Cla01g01399 953 SUPERFAMILY Winged helix DNA-binding domain 729 808 IPR036390 -
Cla01g01399 953 SMART E2F_TDP_2 727 807 IPR003316 GO:0005667|GO:0006355
Cla01g01399 953 SMART E2F_TDP_2 595 660 IPR003316 GO:0005667|GO:0006355
Cla01g01399 953 Pfam PPR repeat 218 248 IPR002885 -
Cla01g01399 953 Pfam PPR repeat 160 178 IPR002885 -
Cla01g01399 953 Gene3D - 590 663 IPR036388 -
Cla01g01399 953 Gene3D - 722 809 IPR036388 -
Cla01g01399 953 MobiDBLite consensus disorder prediction 678 725 - -
Cla01g01399 953 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 36 495 - -
Cla01g01399 953 Pfam E2F/DP family winged-helix DNA-binding domain 729 807 IPR003316 GO:0005667|GO:0006355
Cla01g01399 953 Pfam E2F/DP family winged-helix DNA-binding domain 596 660 IPR003316 GO:0005667|GO:0006355
Cla01g01399 953 MobiDBLite consensus disorder prediction 703 721 - -
Cla01g01399 953 SUPERFAMILY HCP-like 220 381 - -
Cla01g01399 953 Pfam PPR repeat family 320 369 IPR002885 -
Cla01g01399 953 Pfam PPR repeat family 392 437 IPR002885 -
Cla01g01399 953 Pfam PPR repeat family 250 297 IPR002885 -
Cla01g01399 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Cla01g01399 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Cla01g01399 953 Gene3D Tetratricopeptide repeat domain 383 512 IPR011990 GO:0005515
Cla01g01399 953 PANTHER OS02G0679200 PROTEIN 36 495 - -
Cla01g01399 953 Gene3D Tetratricopeptide repeat domain 314 382 IPR011990 GO:0005515
Cla01g01399 953 Gene3D Tetratricopeptide repeat domain 90 206 IPR011990 GO:0005515
Cla01g01399 953 SUPERFAMILY Winged helix DNA-binding domain 594 658 IPR036390 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01399 Cla06g01632 CCT
Cla01g01399 Cla06g01532 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01399 Cla-Chr1:28423998 Cla08g00621 Cla-Chr8:18186900 1.40E-65 dispersed
Cla08g01431 Cla-Chr8:27149914 Cla01g01399 Cla-Chr1:28423998 9.27E-08 dispersed
Cla01g00870 Cla-Chr1:10837622 Cla01g01399 Cla-Chr1:28423998 1.99E-20 transposed
Cla05g00880 Cla-Chr5:8677246 Cla01g01399 Cla-Chr1:28423998 6.15E-13 transposed
Cla06g01532 Cla-Chr6:28875341 Cla01g01399 Cla-Chr1:28423998 3.70E-29 transposed
Cla01g01399 Cla-Chr1:28423998 Cla06g01632 Cla-Chr6:29848864 1.39E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60420 PF02319 E2F_TDP 8.60E-20 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01399 - - csv:101218969 893.649