Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01406 ATGTCATCTCTTTCAGAACTTGAAAATTCATCTCCCAATATTTTCATACCTGAAGAATGGTCTGAGGCTGCAGAGTCCATAGTTTTTTATTCTCCTACTTCGCCGCCCCCTGTTGTTCTTATCTGTGGTGCCAAAAACTGTGGCAAAAGTACTTTCTCACGCCACCTTCTCAATGTTTTCCTTCAAAGGCATAAAAAAGTGGTTTACCTGGATTCTGATGTAGGACAGCCTGAGTTTACTCCACCAGGTTTTCTGTCTCTCACTGTGGTTGACAGACTAACTCCAGATTTGTCGACTCCATGCCTAAAGACACCTGAAAGATGTTTTTTCTTTGGTGATATTTCCTCAAAAAGAGATCCAACAGCATACTTAAGTTATGCAAGCACCTTGTACGATTATTACCGCAAAGAGTACAATTCTTTTAACAAGACTGAAGAATTTGTGAAGATTGAATTGCCTCTTATTGTAAATACGCCTGGCTGGGTGAAAGGTATTGGTTATGAGATATTGGTAGATATGTTGAAATACATTACTCCATCACATGTAGTCAAAATAAATATATCTGCTGAGAGTAAGAACCTTCCGGCTGGGGAATTTTGGCTAGAAGAGGAGGAAGATTTTGGGACGACCAATCTAATAGAAATACGCTCTGCTCGGCAAGATGCTTTTAACAGATCGATACTAGTGCAAAAGGATGCAAGTCTTATGCGAGATTTGCGTATAATGGCTTATTTTAGACAGTGCTTTTCTAGAGATTGTAATATTACTACAATTAAAGAGCTTGCAAATGCACTGGCATCTCACCCTCCTTACCAAGTTCCAATATCAAGCATTAAGATTAGACACCTGCACTGTCAGGTACCAAGCAATCAGATCTTCTATAGTCTGAATGCAACAATCGTTGGCTTGGCTATATGCTCCAAAAACTCTGAAAATCCACCATGGTCCGTTGGTCTTGGAATTGTTAGAGGCATTGATACGGTCAAAGGTCTGCTATATGTTATCACACCCGTCCCCCATGGCACTCTGGAAAAGGTTGACATTCTTTTGCAGGGCTTTATTCAAATTCCTTCTTGTTTACTGCAGGTTAAGGGATGTATGTCTCCTTACATGTGTGCAAACATTCTACCCACGAGCTAG 1140 40.35 MSSLSELENSSPNIFIPEEWSEAAESIVFYSPTSPPPVVLICGAKNCGKSTFSRHLLNVFLQRHKKVVYLDSDVGQPEFTPPGFLSLTVVDRLTPDLSTPCLKTPERCFFFGDISSKRDPTAYLSYASTLYDYYRKEYNSFNKTEEFVKIELPLIVNTPGWVKGIGYEILVDMLKYITPSHVVKINISAESKNLPAGEFWLEEEEDFGTTNLIEIRSARQDAFNRSILVQKDASLMRDLRIMAYFRQCFSRDCNITTIKELANALASHPPYQVPISSIKIRHLHCQVPSNQIFYSLNATIVGLAICSKNSENPPWSVGLGIVRGIDTVKGLLYVITPVPHGTLEKVDILLQGFIQIPSCLLQVKGCMSPYMCANILPTS 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28520229 28523190 + ClCG01G014230.1 Cla01g01406 264995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01406 379 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 11 368 IPR045116 GO:0006396|GO:0051731
Cla01g01406 379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 86 IPR027417 -
Cla01g01406 379 Gene3D - 15 250 IPR027417 -
Cla01g01406 379 PANTHER OS01G0354700 PROTEIN 11 368 - -
Cla01g01406 379 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 43 246 IPR032319 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01406 K06947 GRC3, NOL9; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] - csv:101217238 714.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01406 Cla-Chr1:28520229 Cla09g01797 Cla-Chr9:35493343 3.04E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g467 . . . . Bpe12g00569 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0107 . . Chy12g01307 Cme12g01732 Blo13g00034 . . . . . . Bma08g00194 . . . . . . Car18g00131 . . . . . . . . . Cla01g01406 Cam01g1468 Cec01g1511 Cco01g1555 Clacu01g1494 Cmu01g1388 Cre01g1305 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011454 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 3 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01406 Cla_Chr01 FPKM 15.421941 16.157984 14.33938 14.514359 4.970579 5.136831 6.226891 0.602601 1.530578 0.588102