Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01418 ATGGGGGAAAAGCCAGAAGTGTTGGAGGCTGTTTTGAAGGGAGCTGTGGATTTGGCTGCTGAGGAAAGGCTGAAGATTTTTGGGCACAATAAGCTCAAGGAAAAGAAGGAAAGCAAATTTTTGAAGTTTTTGGGGTTCATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCAATTATGGCTATTGCACTTGCTAATGGAGGAGTAAATGCCCAGCTAAATGGATTGTTATTTATGTTTCTTTCTTTCACATCTCCTTTGCTGTTCATTGTTCTGAGAAATGCTGCGGCTGCTCTCATGGCTCGTTTTGCTCCCAAAGCCAAGGTATCAGAGATGAATTCTTGTGTGTGCTGCATTTTTGCTGGAACCTTAGATGGAAGGTGGAGCGAGCAAGATGCTTCCATTTTAGTTCCTGGCGACGTAATCAGTGTTAAACTTGGGGACATTATTCCAGCTGATGCACGTCTTCTAGATGGGGATCCACTAAAAATTGACCAGTTTGCGCTTACAAGCGAATCTCTCCCTGTAACGAAGGGTCCTGGTGATGGTGTGTGCTCTAGTTCTACTTGCAAGCAAGGAGAGATTGAAGTTTTGGTCATTGCTACTAGTGTCTACACCTTTTTTGGTAAAGCTGCTCATCTTGTTGACACCACCAATCAAGTGGGACACTTCCAAAAGGTCTTAACAGCCATAGGGAATTTCTGCATATGTTCCATTGTTGTGGGAATGGTAATAGAGATCATTGTAATGTACCCAATTCAGGACCGTGAGTATCGCCCTAGAATTCATAACCTCCTTGTGCTACTAATTGGAGGAATTTCTATAGCCATGCCTACAGTTCTATCTGGTGTCATCATAAAGAGAATGACAGCTATTGAGGAAATGGCAGGCATGGATGTGCTCTGCAGTGATAAGACAGGAACCCTGACTTTTAACAAGTTAACTGTTGACAAAAATCTTGTTGAGGTTTTCAGTAAAGGGATAGATGCAGACACTGTTGTTCTAATGGTTGCTAGAGCATCAAGAATTGAGAAGCAAGATGCTATTGATACTGCCATTGTTGGAATGCTAGCTGATCCAAAGGAGGCACGTGCTGGGATTCAGGAAGTACATTTCCTACCTTTCAATCCTACTGATAAGCGAACAGCTTTGACTTATATCGACCATGAGGGCAAGATGCACAGAGTCAGTAAAGGCGCTCCAGAACAGTCAGAGATAGAGAGAAAAGTTCATCCAGTGATTGATAAATTTGCTGGACGAGGTTTGCGTTCACTTGTTGTAGCATACCAGGAAGTTCCAGAAGGAAGAAAAGAGAGTGCTGGAGGTCCTTGGCAATTCATGGGCCTCTTGCCTCTGTTTGATCCACCAAGACATGATAGTGCAGAGACAATTAGAAGAGCTTTAAATCTCGGCATAAATGTGAAAATGATTACTGCTGGCTATAGGCAAGGAAACGGGACGTCGATTGGGGATGGGAACCAACATGAAAAGGATGAGTCTATTGCTGCTTCACCTGTTGACGACCTTATAGAAAAGGCAGATGGTTTTACGGGTGTATTCCCTGAGCACAAATACGAGATTTTAAAACACTTGCAAGCTATGAAACATATATGTGGGATGACTGGTGATGGAGTGAATGATGCTCTTGCACTTAAAAAAGCAGACATAGATATAACTGTTGCAGATGCAACTGATGCTGCTCGAAGTGCTTCTAATATTGTTCTTACTGAACCTGGTCTCCGTGTTATCATCAATTCTGTTTTGACTAGTAGAGAAATATTTCAGAGGATGAAGAATTACACGGTAACCTGTGGTTTTGAACTTGATATTTCTTCATTCAGTAGTTGGTTTTTCAGGTTACAGCCTGATAGGGTTAAACCATCTCCTCTGCCAGATAGTTGGAAGCTGGCTGAAATTTTTACTATTGGCATTGTACTCGGTAGTTACTTGGCAATGATGACGCGAGTCTTTAGAGTACCAACCCTTGAAAAAACAGATCATGATGATTTCCGGAAGCTAGCATTAGCTATATATCTTCAAGTGAGCACCATCAGTCAGGCCCTCATTTTTGTTACGCGATCTCGAAGTTGGTCCTATGTCGAGCATCCTGGGGTGTTTCTTGTAGTGGCTTTTATTCTTGCTCAATTGGTTGCCACTCTGATTGCTGTCTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGCTTTGCTATTCGATATGCTTTGAGTGGGAAGACTTGGGATCTCATGCTTGAGCAAAGGGTTGCTTTCACGAGACAAAAGGATTTCGGTAAGGAACAACGTGAGTTGCAATGGGCTCACGCACAAAGAACGCTGCATGGTTTGCAACCGCCTGATACTAAGATGTTCACTGAGCGAACTCATTTCATAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGATATGTTGCAAACATCGTCTTTGGTTTATTGAGGGAACTCCATACACTGAAAGGTCATGTAGAGTCAGTGGTGAGATTGAAAGGTCTCGATATTGAAACGATTCAACAAGCATACACCGTGTGA 2586 42.81 MGEKPEVLEAVLKGAVDLAAEERLKIFGHNKLKEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGVNAQLNGLLFMFLSFTSPLLFIVLRNAAAALMARFAPKAKVSEMNSCVCCIFAGTLDGRWSEQDASILVPGDVISVKLGDIIPADARLLDGDPLKIDQFALTSESLPVTKGPGDGVCSSSTCKQGEIEVLVIATSVYTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIVVGMVIEIIVMYPIQDREYRPRIHNLLVLLIGGISIAMPTVLSGVIIKRMTAIEEMAGMDVLCSDKTGTLTFNKLTVDKNLVEVFSKGIDADTVVLMVARASRIEKQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQSEIERKVHPVIDKFAGRGLRSLVVAYQEVPEGRKESAGGPWQFMGLLPLFDPPRHDSAETIRRALNLGINVKMITAGYRQGNGTSIGDGNQHEKDESIAASPVDDLIEKADGFTGVFPEHKYEILKHLQAMKHICGMTGDGVNDALALKKADIDITVADATDAARSASNIVLTEPGLRVIINSVLTSREIFQRMKNYTVTCGFELDISSFSSWFFRLQPDRVKPSPLPDSWKLAEIFTIGIVLGSYLAMMTRVFRVPTLEKTDHDDFRKLALAIYLQVSTISQALIFVTRSRSWSYVEHPGVFLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGFAIRYALSGKTWDLMLEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFIELNHMAEEAKRRAEIARYVANIVFGLLRELHTLKGHVESVVRLKGLDIETIQQAYTV 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28677689 28683349 + ClCG01G014340.1 Cla01g01418 265007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01418 861 PANTHER CALCIUM-TRANSPORTING ATPASE 622 833 - -
Cla01g01418 861 Gene3D - 315 454 IPR023299 GO:0000166
Cla01g01418 861 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 19 603 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cla01g01418 861 Gene3D - 801 861 - -
Cla01g01418 861 PRINTS P-type cation-transporting ATPase superfamily signature 565 577 - -
Cla01g01418 861 PRINTS P-type cation-transporting ATPase superfamily signature 303 317 - -
Cla01g01418 861 PRINTS P-type cation-transporting ATPase superfamily signature 471 481 - -
Cla01g01418 861 PRINTS P-type cation-transporting ATPase superfamily signature 542 561 - -
Cla01g01418 861 PRINTS P-type cation-transporting ATPase superfamily signature 166 180 - -
Cla01g01418 861 PRINTS P-type cation-transporting ATPase superfamily signature 449 460 - -
Cla01g01418 861 Pfam Cation transporter/ATPase, N-terminus 19 61 IPR004014 -
Cla01g01418 861 ProSitePatterns E1-E2 ATPases phosphorylation site. 305 311 IPR018303 -
Cla01g01418 861 Pfam haloacid dehalogenase-like hydrolase 299 556 - -
Cla01g01418 861 PRINTS H+-transporting ATPase (proton pump) signature 514 530 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g01418 861 PRINTS H+-transporting ATPase (proton pump) signature 573 598 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g01418 861 PRINTS H+-transporting ATPase (proton pump) signature 542 558 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g01418 861 PRINTS H+-transporting ATPase (proton pump) signature 411 429 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g01418 861 PANTHER CALCIUM-TRANSPORTING ATPASE 11 603 - -
Cla01g01418 861 SFLD p-type atpase 284 593 IPR044492 -
Cla01g01418 861 SUPERFAMILY HAD-like 299 587 IPR036412 -
Cla01g01418 861 SUPERFAMILY Calcium ATPase, transduction domain A 125 216 IPR008250 -
Cla01g01418 861 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 756 IPR023298 -
Cla01g01418 861 SMART Cation_ATPase_N_a_2 1 67 IPR004014 -
Cla01g01418 861 Pfam E1-E2 ATPase 126 284 - -
Cla01g01418 861 Gene3D - 46 127 - -
Cla01g01418 861 Gene3D - 610 755 - -
Cla01g01418 861 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 517 603 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g01418 861 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 89 479 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g01418 861 Gene3D - 128 203 - -
Cla01g01418 861 Gene3D - 279 599 IPR023214 -
Cla01g01418 861 PANTHER PLASMA MEMBRANE ATPASE 1 11 603 - -
Cla01g01418 861 PANTHER PLASMA MEMBRANE ATPASE 1 622 833 - -
Cla01g01418 861 SFLD C1.7: P-type atpase like 284 593 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01418 Cla06g01611 CCT
Cla01g01418 Cla06g01611 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01418 Cla-Chr1:28677689 Cla08g01268 Cla-Chr8:25581049 0 dispersed
Cla01g01418 Cla-Chr1:28677689 Cla06g01611 Cla-Chr6:29630953 0 wgd
Cla01g01418 Cla-Chr1:28677689 Cla09g01799 Cla-Chr9:35503369 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01418 K01535 - csv:101214920 1278.85