Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01420 ATGGGCATGTTTGTTTTGGTTGTTTCATTGCTTTTACTATCAACCCTTTTCAGCTCTCGCACTTTTGCTCTCACTCCAGATGGCTTAACGTTGTTGGAAATTAGAAGCGCGTTTAATGATAGCAAAAACCTCCTTGGTGATTGGGAAGCTTCTGATGAACTTCCCTGCAAATGGTCTGGTATATCTTGTCACCCTGAGGACCAACGAGTTAGCTCAATTAACTTGCCTTACATGCAACTTGGTGGGTTCATTTCTCCCAGCATTGGTAAACTCAGTAGATTACAAAGACTGGCACTTCACGAAAATGGCTTACGTGGAAATATTCCTAACGAAATCACTGAATGCACTCAGCTCAGAGCTCTGTATTTGAGGTCTAATTATCTCCAAGGTGGCATACCGTCGGATATTGGAAACCTTTCTGCTCTTACAATACTGGATTTGTCAAGCAATTCGTTGAAGGGTGCTATTCCGTCATCCATTGGTCGTCTCTCGCTTCTGCGTCATTTGAATTTGTCCACAAACTTTTTCTCTGGGGAAATACCTGATTTTGGAGTTCTGAGCACATTTGGAAGCAATTCGTTCATTGGTAATCTAGATCTCTGCGGTCATCAAGTTAACAAGGCTTGCCGAACCTCACTGGGATTCCCTGCAGTGTTGCCCCATGCTGAAAGTGATGAAGCTTCTGTTCCTGCAAAAAAATCTTCACACTACGTCAAAGGGGTATTAATTGGTGCAGTGTCCACTATGGGTGTTGCACTTGTAGTGCTTGTTCCATTCTTGTGGATACGGTGGCTATCAAAGAAGGAAAGAGCTGCCAAGAGATACACAGAAGTCAAAAAGCAAGTGGTTCATGAACCAAGCACAAAACTTATTACTTTTCACGGTGACCTACCGTACCCATCATGTGAGATCATAGAAAAGCTGGAGTCACTAGATGAAGAAGATGTTGTCGGTTCTGGAGGATTTGGCATTGTATACCGAATGGTCATGAATGATTGTGGAACATTTGCTGTGAAAAAGATTGATGGAAGCAGAAAAGGTTCAGATCAAGTGTTTGAGAGAGAGTTGGAGATTTTGGGTTGCATCAAACATATAAACTTGGTCAATTTGCGGGGATACTGTAGTCTTCCAACTTCAAAGCTTCTTATCTATGACTTTCTAGCAATGGGCAGCTTAGATGATTTTTTGCACGAACATGGACCAGAAAAACAGCCTTTGGATTGGAGAGCTCGTCTAAGGATAGCCTTCGGCTCTGCCAGGGGGATTGCATACTTGCATCATGATTGTTGTCCAAAGATCGTGCATCGTGATATTAAATCGAGTAACATTCTACTTGATGAAAATTTGGAGCCTCATGTATCAGACTTTGGACTGGCCAAGCTTTTGGTTGATGACGATGCTCATGTCACAACTGTTGTTGCTGGAACGTTTGGCTATTTGGCTCCAGAATACCTACAAAGTGGGAGGGCAACTGAAAAATCAGATGTTTATAGCTTTGGAGTTTTATTATTGGAGCTGGTTACTGGGAAGAGACCAACTGATCCATCATTTGTAAAGCGAGGCTTAAATGTTGTTGGTTGGATGCACACATTATTGGGAGAAAACAAAATGGATGAGATAGTTGACAAAAGATGCAAGGACGTTGATGCTGATACTGTAGAAGCAATTCTCGAAATAGCAGCCAAATGCACGGATGCCGACCCAGACAATCGGCCATCAATGAGTCAAGTTTTACAGTTTCTTGAGCAAGAAGTCATGTCACCTTGTCCTAGTGATTTCTATGAGTCTCAGTCTGATTATTCTTGA 1806 42.25 MGMFVLVVSLLLLSTLFSSRTFALTPDGLTLLEIRSAFNDSKNLLGDWEASDELPCKWSGISCHPEDQRVSSINLPYMQLGGFISPSIGKLSRLQRLALHENGLRGNIPNEITECTQLRALYLRSNYLQGGIPSDIGNLSALTILDLSSNSLKGAIPSSIGRLSLLRHLNLSTNFFSGEIPDFGVLSTFGSNSFIGNLDLCGHQVNKACRTSLGFPAVLPHAESDEASVPAKKSSHYVKGVLIGAVSTMGVALVVLVPFLWIRWLSKKERAAKRYTEVKKQVVHEPSTKLITFHGDLPYPSCEIIEKLESLDEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPTSKLLIYDFLAMGSLDDFLHEHGPEKQPLDWRARLRIAFGSARGIAYLHHDCCPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDDDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMHTLLGENKMDEIVDKRCKDVDADTVEAILEIAAKCTDADPDNRPSMSQVLQFLEQEVMSPCPSDFYESQSDYS 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28700111 28704681 + ClCG01G014360.2 Cla01g01420 265009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01420 601 SUPERFAMILY Protein kinase-like (PK-like) 291 582 IPR011009 -
Cla01g01420 601 Gene3D Ribonuclease Inhibitor 26 211 IPR032675 -
Cla01g01420 601 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524
Cla01g01420 601 ProSiteProfiles Protein kinase domain profile. 311 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01420 601 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 593 - -
Cla01g01420 601 Gene3D Phosphorylase Kinase; domain 1 270 386 - -
Cla01g01420 601 SUPERFAMILY L domain-like 26 206 - -
Cla01g01420 601 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cla01g01420 601 PANTHER REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 35 593 - -
Cla01g01420 601 SMART serkin_6 311 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01420 601 Gene3D Transferase(Phosphotransferase) domain 1 387 591 - -
Cla01g01420 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Cla01g01420 601 Pfam Protein kinase domain 313 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01420 Cla06g01608 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01420 Cla-Chr1:28700111 Cla01g02327 Cla-Chr1:37065220 2.70E-112 dispersed
Cla07g01072 Cla-Chr7:27323834 Cla01g01420 Cla-Chr1:28700111 0 transposed
Cla07g01129 Cla-Chr7:28178597 Cla01g01420 Cla-Chr1:28700111 6.74E-45 transposed
Cla09g00743 Cla-Chr9:7332732 Cla01g01420 Cla-Chr1:28700111 6.45E-95 transposed
Cla11g01583 Cla-Chr11:29526364 Cla01g01420 Cla-Chr1:28700111 0 transposed
Cla11g01673 Cla-Chr11:30348052 Cla01g01420 Cla-Chr1:28700111 7.30E-94 transposed
Cla01g01420 Cla-Chr1:28700111 Cla06g01608 Cla-Chr6:29597837 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80261 PF00069 Pkinase 7.40E-47 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01420 - - csv:101219279 1137.48