Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01422 ATGGCGGGTCGGAGGGTCTACGGCGGCGGTGGTTGCGACGACGGTGGTAGTATAAGTGGTGTTTCTTCTAATCATAGTGTTTTGCTTCAGAATCGTGGAGGGTCTTTTGCTTCTGAGCCTCTTAATGCTCTGTTCCTTTCTGGGTCATCTTCTTCTACTTCCCCTTCTCTGCTTGATTGTTCTGGTGTAGGTTCAAGATCCATGATGAGTTTCGAAGATATTCGTGGAGGAAATGGATCGAATAGATCGTTCTTTTGCCCTTTCGATAGTGAAGATAATGGGGATGAAGACTTGGATGATTACTTCCATCACCCTGAAAAAAAGAGGCGTTTAACTGTTGATCAAGTCCGGTTCCTCGAGAAAAGTTTCGAGACCGAGAACAAGCTCGAACCGGAAAGGAAAGTTCAATTAGCGAAGGACCTCGGGCTGCAGCCTCGTCAGGTTGCTATATGGTTTCAAAATCGCCGGGCTCGGTGGAAAACCAAACAGCTGGAGAAGGACTATGAGGCTCTTCAATCCAGCTATGGAAGCCTTAAGGTTGACTACGAAAACCTACTCAAGGAGAAGGATTCACTAAAAGCCGAGATTCTTCTCCTAACAGATCAACTGCTACACAAAGAAAAAGAAAGAGGAAACTCTGTGCTGTCTGAAGTTGACAAATTTGGTGAAGAACCACCCAATAATCTGGTTGCTGATTCACATTTGGAGGATGAAGTCTCCAAATCTTCAAAGCTGGGTTGTAAGCAAGAGGATATCAGTTCAGTCAAAAGTGATATATTTGATTCAGATAGCCCACACTACACTGATGGGGTTCACTCTTCACTCCTAGAGCCTGGAGATTCTTCCTATATTTTCGATCCCGATCAGTCCGACTTATCGCAAGACGAAGAAGATAACTTGGGAAAGAATCTATTGCCCCCTTACATCTTCCCAAAGCTCGAAGATGTCGATTACTCTGACCCGCCCACAAGTTCTTGTAATTTTGTATTCCCCATTGAAGACAATGCCCTTTGGTCCTGGTCTTATGTCGAGCCTAGTCGAGCCAGGTTTAGTTTCTGCCTAAGATTTCCATCCATCCTGTAA 1083 44.88 MAGRRVYGGGGCDDGGSISGVSSNHSVLLQNRGGSFASEPLNALFLSGSSSSTSPSLLDCSGVGSRSMMSFEDIRGGNGSNRSFFCPFDSEDNGDEDLDDYFHHPEKKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVDYENLLKEKDSLKAEILLLTDQLLHKEKERGNSVLSEVDKFGEEPPNNLVADSHLEDEVSKSSKLGCKQEDISSVKSDIFDSDSPHYTDGVHSSLLEPGDSSYIFDPDQSDLSQDEEDNLGKNLLPPYIFPKLEDVDYSDPPTSSCNFVFPIEDNALWSWSYVEPSRARFSFCLRFPSIL 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28719454 28721638 - ClCG01G014380.1 Cla01g01422 265011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01422 360 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 25 339 - -
Cla01g01422 360 SUPERFAMILY Homeodomain-like 90 164 IPR009057 -
Cla01g01422 360 Pfam Homeobox associated leucine zipper 162 203 IPR003106 GO:0006355|GO:0043565
Cla01g01422 360 PRINTS Lambda-repressor HTH signature 142 158 IPR000047 GO:0003677
Cla01g01422 360 PRINTS Lambda-repressor HTH signature 133 142 IPR000047 GO:0003677
Cla01g01422 360 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677
Cla01g01422 360 SMART HOX_1 105 166 IPR001356 GO:0003677
Cla01g01422 360 CDD homeodomain 107 163 IPR001356 GO:0003677
Cla01g01422 360 Gene3D - 102 169 - -
Cla01g01422 360 Coils Coil 175 209 - -
Cla01g01422 360 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981|GO:0006355
Cla01g01422 360 Pfam Homeodomain 107 160 IPR001356 GO:0003677
Cla01g01422 360 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 25 339 IPR045224 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01422 - - - bhj:120083292 639.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01422 Cla-Chr1:28719454 Cla10g01364 Cla-Chr10:28694277 1.19E-40 dispersed
Cla07g00851 Cla-Chr7:23751856 Cla01g01422 Cla-Chr1:28719454 4.80E-27 transposed
Cla01g01422 Cla-Chr1:28719454 Cla05g02477 Cla-Chr5:36183064 1.16E-38 wgd
Cla01g01422 Cla-Chr1:28719454 Cla09g01793 Cla-Chr9:35458682 2.91E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60422 PF00046 Homeodomain 1.10E-16 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01422 Cla_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0