Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01426 ATGAGAGAAACAGAAACCACCATTATTGTTGTGATTAAACTGCTAATGATATTTGGCTTTGTAATGAAATTTCAAACTCTAAAGGCTAATATTGCAGATTTTGATGAGGTGTGGCAGAAAAGAGCTGAAGAAGCCAAGAAGGCTTCCTTTAAGGCCTACAAATCCCATCCAGAAGAAGTCACTAGTAATTTCAACAACCAAGTTCAAAGATACTTTGATGCTACAAATAACACAAGGAGACATTTGAGGAAGTACAATGGTCCATGTTTAGCCACGAATCCGATTGATCGTTGTTGGAGATGCGATAAACATTGGGCTAAAAATCGGAAGAAGCTAGCCAATTGTGCACTTGGGTTCGGTCATGGAACAACTGGAGGCAAAAATGGAAGGATTTATGTGGTCCGAGATTCGAGCGATAACGACATGTTGAATCCTAAACCAGGAACCCTACGCTATGGTGTGATACAAGATAGACCACTTTGGATCATATTTGCACATGACATGGTGATTAGGCTAAGTGAAGAGCTTATAATGACGGATAACAAGACATTAGATGGTCGTGGTGCCAATGTGCACATTGCTAATGGTGGTCAAATTACTCTACAATTTGTGAACAATATAATCATCCATAACCTTCACATTCATGATATCAAGGCTGGCAATGGTGGCCTTATAAGAGACTCGGTGAACCACTATGGATTGCGAACACCAAGCGATGGTGATGGAATCTCCATGTTTGGAGCCTCAAAGATTTGGATAGATCATGTTTCTATGTCTAATTGTCAAGATGGGCTTATCGATGCGGTCATGGCATCTACTGCCATTACCATTTCCAACTGTCACTTCACCCATCATAACGATGTAAGCCCCTCAAACCCACAAAAGAAACATAACGTGATGTTATTAGGTGCAAGTGATAGCTACTCAAATGATCAGATAATGCAGGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCGAGATGTCGATGGGGGTTCTTCCATGTGGTCAATAATGACTACACTCATTGGCTTATGTACGCTATCGGGGGCAGCCACAACCCCACCATTATCAGCCAGGGCAACCGTTTCATTGCTCCACCAAACCCAAATTCCAAAGAGGTAACAAAAAGGGCGTATGCGTCAGAAAGCGAATGGAAATCTTGGAACTGGAGGTCAGAGGGAGATCTGATGATGAATGGAGCTTTTTTTATCCAATCTGGGAACCCCATCAAAAGATACTCCAAGAAAGACGTTATACATTCCAAACCCGGCACCTTCGTCACCAGGCTAACACGATTCGCTGGCCCTTTGAAATGCAGAAAAAACCAACCCTGTTAG 1356 42.26 MRETETTIIVVIKLLMIFGFVMKFQTLKANIADFDEVWQKRAEEAKKASFKAYKSHPEEVTSNFNNQVQRYFDATNNTRRHLRKYNGPCLATNPIDRCWRCDKHWAKNRKKLANCALGFGHGTTGGKNGRIYVVRDSSDNDMLNPKPGTLRYGVIQDRPLWIIFAHDMVIRLSEELIMTDNKTLDGRGANVHIANGGQITLQFVNNIIIHNLHIHDIKAGNGGLIRDSVNHYGLRTPSDGDGISMFGASKIWIDHVSMSNCQDGLIDAVMASTAITISNCHFTHHNDVSPSNPQKKHNVMLLGASDSYSNDQIMQVTLAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPNPNSKEVTKRAYASESEWKSWNWRSEGDLMMNGAFFIQSGNPIKRYSKKDVIHSKPGTFVTRLTRFAGPLKCRKNQPC 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28743312 28744994 + ClCG01G014420.1 Cla01g01426 265015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01426 451 Pfam Pectate lyase, N terminus 30 82 IPR007524 GO:0030570
Cla01g01426 451 Pfam Pectate lyase 178 369 IPR002022 -
Cla01g01426 451 SMART amb_all 167 375 IPR002022 -
Cla01g01426 451 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Cla01g01426 451 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Cla01g01426 451 PRINTS Pollen allergen Amb family signature 394 418 IPR018082 -
Cla01g01426 451 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Cla01g01426 451 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Cla01g01426 451 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Cla01g01426 451 SUPERFAMILY Pectin lyase-like 82 446 IPR011050 -
Cla01g01426 451 Gene3D - 92 444 IPR012334 -
Cla01g01426 451 PANTHER PECTATE LYASE 18-RELATED 11 451 IPR045032 GO:0030570
Cla01g01426 451 PANTHER PECTATE LYASE 11 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01426 Cla-Chr1:28743312 Cla10g01416 Cla-Chr10:29217784 0 dispersed
Cla01g01426 Cla-Chr1:28743312 Cla05g02468 Cla-Chr5:36113391 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01426 K01728 - csv:101218812 804.283