Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01428 ATGGCGCCGGTTTTATCTCGGTTACTTCTCCGACGGAATGTTCACGCACCATTTCTTCGCACCTCCACCACCGCCTTCAACTTTTGCAGAACAATTCATTCTATAGTTTTCTCTACGGTAGAAGTGGATCAACTATCAGGTTCTAAGCCAGGAGATGTTCACAACTTGGTTCTGGCTAAACTTCTTCGTTGCATAAGGAAAGGAATGTTGACACAACTTGTGTTTATTTTAGTGCAGGGTAAATGGATTGGATCTTCCGGTTGGCATACTATTGTAGATCCTTTAAATGGAGAACCGTTTATTAGAGTTGCCGAAGTCAATGAAACAGAGATTCAGCCATTTGTGAAGAGTCTGACCAAATGCCCTAAGCATGGCTTACATAATCCTTTCAAATCGCCTGAGAGATATCTGTTGTTTGGAGATGTATCTTCCAAGGCTGCTGACATGCTTTCCAAGCCAGAGGTGACTGACTTCTTCGCAAGGTTAATTCAAAGAGTTTCTCCAAAAAGTTATCAGCAAGCTTGTGCTGAAGTGAATGTCACTGTTAAATTTCTACGGAACTTCTCTGGCGACCAGGTTCGCTTCTTAGCAAGGTCCTTTGCAGTACCTGGAGATCATCTTGGACAACAAAGTCATGGTTTCCGTTGGCCATATGGTCCCGTTGCAATTATCACTCCTTTCAATTTCCCATTAGAAATTCCTGTACTTCAGGTGATGGGTGCACTTTACATGGGCAACAAACCTGTTTTAAAAGTTGATAGCAAGGTTAGCATAGTTATGGAGCAAATGATTCGATTGCTTCACCATTGTGGGCTACCTTTGGAAGATCTAGATTTTATAAATTGTGATGGGAAGACAATGAACAAGTTATTGATTGAGGCAAATCCATCCATGACTCTTTTTACCGGCAGCTCAAGGGTGGCAGATAAGTTGGCTGTAGACTTGAAGGGCCGCATTAAATTGGAAGATGCAGGTTTCGATTGGAAAATCTTAGGACCTGATGTTCGAGAGGAAGACTATGTTGCATGGGTTTGTGACCAAGATGCATATGCTTGTAGTGGCCAGAAGTGCTCGGCACAATCGATACTGTTCATGCATGAGAACTGGTCAACGACTTCACTTATTTCAAAGATAAAGAATCTTGCAGAGAGAAGAAATTTGACCGATTTAACAATTGGCCCAGTTCTTACATTCACAAATGAAATGATACTAGATCATATGAATAAATTGCTCAAAATACCAGGGGCAAAGTTACTCTTTGGTGGTGAACCTCTAAAAAACCATTCCATTCCACCCATATATGGTGCTATAAAACCCACTGCATTATATATTCCACTCGAAGAAATGATGAAAGATGAGAATTATGAGCTCGTGACTAAAGAAATTTTTGGACCATTCCAGATTATTACGGAATACAAGAGAGATCAACTTCCAGTTGTGTTGGATGCTCTTGAGCGGATGCATGCTCATCTAACCGCCGCTGTTGTTTCAAACGACCCTCTTTTTTTGCAGGAAGTTATTGGCAATACGGTGAACGGAACGACATATGTAGGTTTACGAGCGAGGACAACAGGAGCTCCGCAAAACCATTGGTTTGGACCTGCCGGAGACCCTAGGGGTGCAGGTATCGGAACCCCGGAAGCCATCAAACTTGTATGGTCTTGCCATAGAGAGATCATATATGATATTGGCCCGTTGCCCTTGAATTGGACAGTTCCACCATCGACTTGA 1731 42.4 MAPVLSRLLLRRNVHAPFLRTSTTAFNFCRTIHSIVFSTVEVDQLSGSKPGDVHNLVLAKLLRCIRKGMLTQLVFILVQGKWIGSSGWHTIVDPLNGEPFIRVAEVNETEIQPFVKSLTKCPKHGLHNPFKSPERYLLFGDVSSKAADMLSKPEVTDFFARLIQRVSPKSYQQACAEVNVTVKFLRNFSGDQVRFLARSFAVPGDHLGQQSHGFRWPYGPVAIITPFNFPLEIPVLQVMGALYMGNKPVLKVDSKVSIVMEQMIRLLHHCGLPLEDLDFINCDGKTMNKLLIEANPSMTLFTGSSRVADKLAVDLKGRIKLEDAGFDWKILGPDVREEDYVAWVCDQDAYACSGQKCSAQSILFMHENWSTTSLISKIKNLAERRNLTDLTIGPVLTFTNEMILDHMNKLLKIPGAKLLFGGEPLKNHSIPPIYGAIKPTALYIPLEEMMKDENYELVTKEIFGPFQIITEYKRDQLPVVLDALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYVGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPLPLNWTVPPST 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28755830 28761233 - ClCG01G014440.2 Cla01g01428 265017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01428 576 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 70 325 IPR016162 GO:0016491
Cla01g01428 576 SUPERFAMILY ALDH-like 77 544 IPR016161 GO:0016491
Cla01g01428 576 Pfam Aldehyde dehydrogenase family 90 526 IPR015590 GO:0016491
Cla01g01428 576 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 327 518 IPR016163 GO:0016620
Cla01g01428 576 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 27 575 IPR044638 GO:0004029
Cla01g01428 576 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 350 361 IPR016160 GO:0016491
Cla01g01428 576 PANTHER DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 12A1, MITOCHONDRIAL 27 575 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01428 K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] - csv:101214440 1078.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01428 Cla-Chr1:28755830 Cla06g01654 Cla-Chr6:30056618 2.85E-13 dispersed
Cla01g01428 Cla-Chr1:28755830 Cla02g01637 Cla-Chr2:31170876 1.79E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g517 . Blo16g00194 . . . Bpe13g00279 . . Cmo13g00961 . . . . . . Cpe20g00200 . . . . . . . . . . . . . . . . Cone16ag0152 . . . Csa01g00788 Chy12g01328 Cme12g01755 . . Bda11g01689 . . . . . Sed08g2576 . . Cma13g00931 . Car13g00771 . . . Bhi08g01409 Tan05g2088 Cmetu12g1329 Lac10g0368 . . . Cla01g01428 Cam01g1495 Cec01g1535 Cco01g1581 Clacu01g1519 Cmu01g1411 Cre01g1329 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g01016 . 1 505 Aldehyde Dehydrogenase Gene Family AT3G24503 69.4 1.6e-210 729.2
Cla06g01654 . 66 550 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 2.3e-153 539.3
Cla02g01637 . 245 714 Aldehyde Dehydrogenase Gene Family AT3G24503 52.9 2.6e-149 525.8
Cla06g01654 . 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 2.2e-250 861.7
Cla02g01637 . 211 714 Aldehyde Dehydrogenase Gene Family AT3G48000 72.9 5.1e-231 797.3
Cla06g01016 . 18 505 Aldehyde Dehydrogenase Gene Family AT3G48000 55.3 3.2e-161 565.5
Cla06g01654 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 72.3 6.2e-165 577.4
Cla02g01637 . 225 564 Aldehyde Dehydrogenase Gene Family AT1G23800 75.6 1.8e-156 549.3
Cla06g01016 . 18 349 Aldehyde Dehydrogenase Gene Family AT1G23800 54.5 1.5e-102 370.2
Cla11g01542 . 613 1071 Aldehyde Dehydrogenase Gene Family AT4G34240 60.3 2.4e-164 575.9
Cla11g01542 . 678 1069 Aldehyde Dehydrogenase Gene Family AT1G44170 68.1 1.3e-162 569.7
Cla02g02255 . 62 455 Aldehyde Dehydrogenase Gene Family AT1G44170 50.3 1.4e-111 400.2
Cla07g00849 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 7.1e-184 640.6
Cla02g02255 . 2 457 Aldehyde Dehydrogenase Gene Family AT4G36250 54.9 5.5e-152 534.6
Cla02g01832 . 46 614 Aldehyde Dehydrogenase Gene Family AT1G79440 55.3 3.8e-162 568.5
Cla09g01595 . 5 505 Aldehyde Dehydrogenase Gene Family AT2G14170 75.7 1.6e-222 769.2
Cla01g01786 . 262 696 Aldehyde Dehydrogenase Gene Family AT2G14170 68.3 2.4e-181 632.5
Cla06g01634 . 1 507 Aldehyde Dehydrogenase Gene Family AT1G74920 80.9 7.7e-250 859.8
Cla06g01634 . 1 509 Aldehyde Dehydrogenase Gene Family AT3G48170 80.7 1.1e-251 865.9
Cla02g01678 . 46 558 Aldehyde Dehydrogenase Gene Family AT2G24270 87.7 6.5e-265 909.8
Cla01g01428 . 21 576 Aldehyde Dehydrogenase Gene Family AT5G62530 75.0 4.3e-257 884.0
Cla06g00431 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.2e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011636 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01428 Cla_Chr01 FPKM 0.672549 0.585665 0.0 0.0 0.800296 1.09662 1.455292 0.155212 0.243069 0.0