Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01429 ATGGAGGCTGCTGCTGCTCCTTTCGGCTGTCCCCGGCCGGTCGTCAAGACCGAGAAGCCCGCTGGTGATGGCGACAACAATCAAGATTCTCCCTCTAAACAACATCTTCTCGTTAAGAGAGGGAACTATGCAAAACAAGAGCATGAAGCTGAAGATAAAAGCAACTCATCTGATCAAAAAGATTTAAGCTGCACAAACCTTCAGGAAAAGCAACTGGAATCCGCTCGAGCAGAAATGGGAGAAGTGAGAGAAGAAAACCAAAGACTTAAAAAGAGTTTAAACCAAATCATGAAGGATTACGAAGCCCTAAAAATGCAATTCCTAGGGATTGTCGGACAAGAATCGAAGAAATTTCCAAATCAAGACGACATGTCGAACAAGGAACAACAACACGACCAAATCGAGCTGGTTTCACTGACGCTGGGGAGATTTCCGGTGGCGGAGAAGAAAAAAACGGCCGATGAAAAGAACTCTGTGAATATTATTATTGGTGGCAACGACGAAGAAGCTGCCGTTAAAGAGGCATTATCTCTTGGTTTGAATTGCAAATTCAAACATGAAGAATCAATTATGACGGTTGCCGTTAAAGATGTCGATTCTCCGAAAAGTTTTGATCATGAGATGAGGGAGGAAGCTGGAGAGACGAATTGGTCGTCGACTAAAGGGGCGAAGACGATTAGAAGTGTTGAAGATGATGTTACGCCGCAAAATCCACCCAAACGTGCTAGGGTTTGCGTTAGAGCCCGATGCGAAACCGCTACGATGAACGATGGTTGCCAATGGAGGAAATACGGGCAAAAGATAGCAAAAGGAAACCCATGTCCACGAGCATATTATCGTTGCACAGGCTCACCAACATGTCTCGTTCGAAAACAAGTCCAAAGATGTGCTGACGACATGTCAATCTTAATCACCACCTATGAAGGCAATCACAACCACCCATTACCCGCCTCCGCCAACGCCATGGCCTCCACCACCTCGGCCGCTGCCTCCATGCTCCTCTCTGGCTCCTCCACCTCCACCGCGGCCTCCTCCTCGTCCACTAATACAAATAATCTCCAGGGCTTAAACTTTTACACAAATAATTCCAAACCAAATTTTTACTTACCTAATAATTCTTCAATCATTTCATCCACTTCCCCAACTCACCCCACAATCACTTTGGACCTCACTTCAAATCCTTCTTCCTCTTCCTCAAATTGCTCGACCCATTTTGGTAAATTCACATCTAGTTTTCCTAATTCTCGTTATCCTTTTACTAGCCAACTTGATTTCGGATCTTCTAGAAACAATGTGTTGTCGTGGAATAACGGCCTTCTTAGTTACAACAGAAATAACCACCAAACTACTACTACAACTACCAATAATATCTATCAAAATTACATCCAACAACGAAACCCCGCTACGTCACTGCCACATCAGCAACCGCCTTTACCCGACACCATTGCAGCCGCTACGAAGGCCATCACGGCAGATCCGAGCTTCCAATCTGCTCTTGCCGCTGCTCTTACGTCGATCATCAGCACCGGGGGTGCTAGTGCTGGCCCCACCAAGTCAACGTCGGCGAGAGGTGAACAATCCTTGTTTCAGTTGATGGCGGCGACGACAACAAATAAAGGAAATGGATGTGGGACGAGCTTTTTGAACAATATTACGACATCGACGACGACGAGTAATTCACCACCGACGGGGAATATGGTGTTTGTTCCGGCGAGTTCGTTGCCGTTTTCGAGTTCGAAGAGTGCATCGGCTTCTCCAGGTGATCATATTGATCTTACCAATTAA 1785 45.99 MEAAAAPFGCPRPVVKTEKPAGDGDNNQDSPSKQHLLVKRGNYAKQEHEAEDKSNSSDQKDLSCTNLQEKQLESARAEMGEVREENQRLKKSLNQIMKDYEALKMQFLGIVGQESKKFPNQDDMSNKEQQHDQIELVSLTLGRFPVAEKKKTADEKNSVNIIIGGNDEEAAVKEALSLGLNCKFKHEESIMTVAVKDVDSPKSFDHEMREEAGETNWSSTKGAKTIRSVEDDVTPQNPPKRARVCVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCLVRKQVQRCADDMSILITTYEGNHNHPLPASANAMASTTSAAASMLLSGSSTSTAASSSSTNTNNLQGLNFYTNNSKPNFYLPNNSSIISSTSPTHPTITLDLTSNPSSSSSNCSTHFGKFTSSFPNSRYPFTSQLDFGSSRNNVLSWNNGLLSYNRNNHQTTTTTTNNIYQNYIQQRNPATSLPHQQPPLPDTIAAATKAITADPSFQSALAAALTSIISTGGASAGPTKSTSARGEQSLFQLMAATTTNKGNGCGTSFLNNITTSTTTSNSPPTGNMVFVPASSLPFSSSKSASASPGDHIDLTN 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28775137 28779704 + ClCG01G014450.1 Cla01g01429 265018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01429 594 Gene3D WRKY domain 240 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla01g01429 594 ProSiteProfiles WRKY domain profile. 250 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g01429 594 Coils Coil 65 106 - -
Cla01g01429 594 SMART WRKY_cls 255 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g01429 594 MobiDBLite consensus disorder prediction 40 58 - -
Cla01g01429 594 MobiDBLite consensus disorder prediction 1 86 - -
Cla01g01429 594 Pfam WRKY DNA -binding domain 256 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g01429 594 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 45 589 IPR044810 GO:0003700
Cla01g01429 594 SUPERFAMILY WRKY DNA-binding domain 248 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla01g01429 594 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 45 589 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01429 - - - cmo:103482921 779.245
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g01429 Cla06g01605 CCT
Cla01g01429 Cla06g01605 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01429 Cla-Chr1:28775137 Cla02g00199 Cla-Chr2:2110886 3.83E-57 dispersed
Cla05g01057 Cla-Chr5:10905271 Cla01g01429 Cla-Chr1:28775137 1.93E-53 transposed
Cla01g01429 Cla-Chr1:28775137 Cla06g01605 Cla-Chr6:29568866 4.72E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g518 . . Bda06g00552 Bda15g00578 Bpe12g00555 Bpe13g00280 . . . . Cma10g00180 Cma11g00161 Car10g00169 Car11g00139 Sed08g0199 Cpe20g00199 Cpe04g01513 Bhi02g00342 Tan09g2157 Cmetu02g0550 . Hepe09g0135 . . Cla06g01605 Cam06g1779 Cec06g1830 Cco06g1839 Clacu06g1741 Cmu06g1686 Cre06g2502 . . . Cone19ag0085 Lsi02g00307 Csa01g00787 Chy12g01329 Cme12g01756 . . Bda11g01690 Bda14g00841 Bpe07g00791 . Bma03g00818 . Sed08g2579 Cmo10g00198 Cmo11g00149 Cma13g00932 . Car13g00772 . . Cpe18g00805 Bhi08g01407 Tan05g2089 Cmetu12g0663 Lac10g0367 . . . Cla01g01429 Cam01g1496 Cec01g1536 Cco01g1582 Clacu01g1520 Cmu01g1412 Cre01g1330 Lsi06g01483 Csa01g00218 Chy02g02515 Cme02g01901
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001916 3 3 2 0 2 2 3 2 2 2 2 2 3 2 2 2 2 1 3 2 2 2 1 2 2 2 2 5 3 4 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60423 PF03106 WRKY 2.50E-23 CL0274 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01429 Cla_Chr01 FPKM 16.896654 15.774858 17.334419 16.75036 15.071232 18.963055 15.930079 21.073462 18.157261 20.165216