Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01430 ATGACCGTACGAGTTCCTTCCAGCGTGACCCGCATGCAAAGCCTCTCCAACTTCCACGTGCACAACCCGACATCCTCCCGCCACTCTCACGCGCGTCGTGGCAATGGTAGAATAATAGGGGTTTTTGTTGAAGTGGGCACATTGAGTGAGGTGGAGCTTAACGTATCAGCAATGGGGAAGTCGCCAGGGAAATGGATCAAGACCATCTTGTTTGGGAAGAAGTCTTCCAAATCTAATCTTTCTAAGAGCAGAGAGAGAAATGGAAATGAGAAAGAAGTATTGGTTTCTGCCAAGGCATCAGAAAATACTACTGTTATTAGTCATCCTGTAGCTTCACATCCAACCCCAAATACCATAGATACAAATGAAGGGGTGCCAAAAATTACTAACAATGAAGCAGCTAATGTGTTGCATGAAAGATCAGTACCAATTCCAGGAAATCAAGATGCAGAAATTCAAGGATCTACCTGCCAAGATGCACCATCTGATCCTGAGAGAATCCGTGAAGAGGAGGCTGCAACTAAGGCTCAAGCTGCTTTTAGGGGTTATTTGGCTCGCCGAGCATTCCGGGCCCTCAAAGGTATTATTAGGTTGCAGGCGCTTATTCGTGGTCATTTGGTAAGGAGACAGGCTGTTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTCCAGGCTATTGCTCGGGGAAGAAGAGTGAGGCTTTCTGATGTAGGGCTTGAAGTGCAGAACAAATGTAGATTAGTGCAGATACAGGATCAACCATTAGTAGATCCTGCTGGCGTAAGTCTTTCTACACGAATGGCAAAGCTTTCTGCAAATGCTTTCACTATCAAGCTTGCTTCATCTACAACTTCAAAACCTATGCAACTCTATTTTGACACTGAAGCTGAAAATTCAGTCTTGAAATGGTTAGAACGCTGGTCAAATTCTAGGTTTTGGAAACCAATTCCCCAAGTAAAAAAAGCTCCCGAGTCTAAATCTCAAAGAAGGCTGAGCACTGGTCAAACTGGAGAGGCACATACCGTGAGATCAAAGCGCACAAGGAGAGTTCCTACTGCAAACAATGACAGTGCTGCTGTCCAATCATCTACAGAATTTGAGAAACCCAAACGGAATTTTAGGAAAGTCTCTAGTCATTCAGCCGCCGAGCAGGTTCAGGAGAATCCCCAGATGGAGCTCGAAAAGGTCAAGCGTAGTCTGAGAAAGGTCCATAACCCCGTCCTTGAGAATCCTGCCCAAACAGAAGTTGATGCTGCTTCTAATGGTCTAAGCCGTGACGTTTTGGCGAGAGGTACTAGTAATTCTTCTGAGAAGATGAAAAAAGAGGCAATCTCAACAAATCCCCTCCAGCCTGATTTGGAAACAACTCCTGAGCCGTTACCAACTAAAGAGATGGTTAATGTACCTATCAGTGATCCAGTTGTAGATTCACAGCCTTTGATTGAGAGCGGTGACAAGGATAAAAGCATTGCTGGAGATGAGGCTGCTGTGGAGACTCAGCCTCTGACAGAGAGCTACACTAAAGATGAAATCAACCCATTACCAAATGGGGAATCGAACCACAAGGAAGATCATTCTAACAACGAGAATCCGAAATCTGGCAGGAAATCCTCTACTCCAGCCAAGCAAGAGCGAGTGGAGAATGGGATGCAAAACAGTCCAACCTTACCTAGCTACATGGCAGCAACTGAATCTGCTAAGGCAAAACTGAGAGCACAAGGATCTCCAAGATTTGGACAGGATAGTGAAAAAAATAACAACCTCAACCGACGTCATTCTTTACCGTCACCCACTAATGCTAAAATTAGCTCACAGTCTCCACGAACACTAAGACTTGTTCAAGCAGGTGGCAAAGGAGGAAACAAAAATGACAAGGCACTTCTGGGATCAAGAGATGGAAATGGAAAGGTAATCCAAGCAGACTGGAGAAGAAATTCAAATCTTCCGGTTTCGATATCAATGGCGAATACACCAATTGAAGCCGCAACCTTCTGGACCCAAGCAAATGCTCTCCTAAGGAAAAACTTAACCTACCAGAAACGAAATTTGAGGACAAATATTCGTCTGATTTCCTTCCCGTTCATCCTCTGTTTATTGCTCGTTCTACTTCAAAAAATAGTCAACAACGAATTGGATAAGCCGAAGAACAATTGTGGTTGTGTTTGTGTTGATACGAATGGAGATGGTGTATGTGAGAAAGTTTGTGGGTTAGAGTACTCAACTTTGATACAAGCAGTGAGCTGCCCCATTCCAAGTCCTCCACAATGGCCTCCAATATTGCAAATGCCTGCTCCTCATTTTCGTGCTGTGCGAACAGATTCTTTTCCATATGAAGACTTGCCAAATGAATCATGCAGGGAATCAATGTCATGTCCTGTTACTATGCTTTTCACTGGAAATAATCGCTCTCTTGGAAATATTTTGGCTGCAAGTATGGTCCCAAGTTCTTTGTCTTGGAACTCTTCTGATGTTCAATATGGTGCATCGCTTAACGTTTTGGGATCAGCATCGAGGCCTAGAACAAACAATTATCTTGATCCTGCTTTCTTTTCAAACCTTCCTTTATATTATATGCAGCGTCAGTGTGTGACAGGCTCGACATTGTCAATTCCTGTTTCAATATTCTCTCTTACAAAGACACAAGATATTGCATGTGTTCAAGGTCTACAATTGTGGTGCAATAGTTCTTCAGAGGTGAATGATGAGATATACAGAGGTTACAAAAACGGGAATTCAGAGGGGAAAATCAATGAGATTCTTTCAGGTTTCAATTTCTTAAATTCTGATGGGAACAATTTTAATGTGACTATATGGTATAATTCATCATATAAGAGTGACATTGGCCGTTCTTCGAATGTTCTGTTGCGGGTTCCACGCTTGGTTAATCTGGCATCCAATGGCTATCTTAAGTTTTTGCTAGGAGCAAGCACAGAGATGCTCTTTGAGTTTGTCAAAGAAATGCCGAAACCTGCAACAAAGATCAGGCTGGATTTCTCTTCTCTACTTGGTGCACTCTTTTTTACGTGGGTCATCCTCCAGCTTTTTCCAGTTATCTTGACATCTTTGGTATATGAGAAGCAACAGAAACTGAGAGTCATGATGAAAATGCATGGGCTTGGTGATGGGCCTTATTGGATGATTTCGTATGCTTATTTTCTCACAATTTCTGCAGTATACATGTTTTGTTTTGTGTTGTTTGGTTCAGTTATAGGGCTAAAGTTTTTTACAATGAATGACTACAGTATCCAGTTTGTGTTCTATCTCTTATTTATAAATTTGCAAGTCTCCCTGGCCTTTCTAGTAGCTGCCATGTTTTCAAATGTCAAGACTGCTGAAGTTTCAACATATATATGTGTCTTCGGAACAGGGCTCTTAGGTGGATTTCTCTTCCAGTTTTTTATTGAAGATCCATCATTCCCACGTGGCTGGATCATGGTTATGGAGTTATATCCTGGATTTTTGCTGTATCGTGGGTTGTATGAGTTTGCATTTTATTCTTTCACTGGGAATCTAATGGGGACTTATGGGATGCGCTGGGGAGATTTGACCGATAGTACTAATGGAATGAGAGAAGTCTTGATCATTATGCTTGTTGAGTGGATAGTGGTGCTTCTAGTTGCATATTGTATCGATAAAGTTTTATCATCGGGAAGTTGGAAGTGTGCATTATTTTTCCTCCAAAGACATGACAAAAAACCTCCATCTCAGAATCCTGGTTTTGAAAGGCAAGGTTCAAAAGTTTTGGTTCAAACTGATAAACCTGATGTCAGACAAGAGAGGGAGAAGGTCGAAAAGTTGCTAAAGGAAGGAGATCCAAGTTATGCCATCGTTTCTGACCATCTCAAAAAGGTGTATCCAGGAAAGGATGGAAACCCTGAGCAGTTTGCAGTTAGAGGACTATCTCTTGCTCTGGCTCGAGGAGAATGCTTTGGGCTGCTAGGTCCAAATGGTGCGGGAAAGACCTCCTTTATCAATATGATGATTGGTCTTATAAAACCAACCGCTGGAACAGCCTTGGTTGAAGGTCTGGACATAAGCACTGAGATGAATGGCATATACGCAAGCATGGGTGTTTGTCCACAGCATGACCTGCTATGGGAAACCTTAACAGGAAGGGAGCACCTACTCTTTTATGGCAGACTGAAGAATTTAAAAGGTTCTGCTTTAATACAAGCAGTGGAAGAATCTCTCAAGGGTGTCAACCTCTTCCATGGAGGAGTAGCAGAAAAACAAGCTGGGAAGTACAGTGGAGGTATGAAGAGGAGGCTTAGTGTTGCTATTTCACTAATTGGGGATCCTAAAGTTGTCTATATGGATGAGCCAAGCACCGGCCTAGATCCAGCTTCAAGAAAAAATTTATGGAATGTTGTTAAGCGTGCAAAGCAAGATCGAGCAATCATCCTTACTACACATTCTATGGAAGAGGCGGAAGTCTTATGCGATCGGATAGGAATTTTTGTAGATGGAAGCCTGCAGTGTATTGGAAATCCAAAAGAGCTTAAAGCCAGATATGGCGGGGCTTATGTATTTACAATGACAACATCCCCTGCTCATGAAGGACATGTTGAGAACATGGTGAAGCATTTGGCCTCTGGAGCTAGCAAGATATACCACTTATCTGGAACTCAAAAATTTGAGCTTCCAAAACACCAAGTTCGGATTGCTGATGTGTTTCAAGCAGTTGAAAATGCCAAAAGCAGGTTTACAGTGTTGGCTTGGGGTTTGGCTGACACAACTTTAGAGGACGTCTTTATCAAAGTTGCTAATGGCGCCGAGTCTTCAGATATGCTTTCTTGA 4800 42.54 MTVRVPSSVTRMQSLSNFHVHNPTSSRHSHARRGNGRIIGVFVEVGTLSEVELNVSAMGKSPGKWIKTILFGKKSSKSNLSKSRERNGNEKEVLVSAKASENTTVISHPVASHPTPNTIDTNEGVPKITNNEAANVLHERSVPIPGNQDAEIQGSTCQDAPSDPERIREEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGIVKFQAIARGRRVRLSDVGLEVQNKCRLVQIQDQPLVDPAGVSLSTRMAKLSANAFTIKLASSTTSKPMQLYFDTEAENSVLKWLERWSNSRFWKPIPQVKKAPESKSQRRLSTGQTGEAHTVRSKRTRRVPTANNDSAAVQSSTEFEKPKRNFRKVSSHSAAEQVQENPQMELEKVKRSLRKVHNPVLENPAQTEVDAASNGLSRDVLARGTSNSSEKMKKEAISTNPLQPDLETTPEPLPTKEMVNVPISDPVVDSQPLIESGDKDKSIAGDEAAVETQPLTESYTKDEINPLPNGESNHKEDHSNNENPKSGRKSSTPAKQERVENGMQNSPTLPSYMAATESAKAKLRAQGSPRFGQDSEKNNNLNRRHSLPSPTNAKISSQSPRTLRLVQAGGKGGNKNDKALLGSRDGNGKVIQADWRRNSNLPVSISMANTPIEAATFWTQANALLRKNLTYQKRNLRTNIRLISFPFILCLLLVLLQKIVNNELDKPKNNCGCVCVDTNGDGVCEKVCGLEYSTLIQAVSCPIPSPPQWPPILQMPAPHFRAVRTDSFPYEDLPNESCRESMSCPVTMLFTGNNRSLGNILAASMVPSSLSWNSSDVQYGASLNVLGSASRPRTNNYLDPAFFSNLPLYYMQRQCVTGSTLSIPVSIFSLTKTQDIACVQGLQLWCNSSSEVNDEIYRGYKNGNSEGKINEILSGFNFLNSDGNNFNVTIWYNSSYKSDIGRSSNVLLRVPRLVNLASNGYLKFLLGASTEMLFEFVKEMPKPATKIRLDFSSLLGALFFTWVILQLFPVILTSLVYEKQQKLRVMMKMHGLGDGPYWMISYAYFLTISAVYMFCFVLFGSVIGLKFFTMNDYSIQFVFYLLFINLQVSLAFLVAAMFSNVKTAEVSTYICVFGTGLLGGFLFQFFIEDPSFPRGWIMVMELYPGFLLYRGLYEFAFYSFTGNLMGTYGMRWGDLTDSTNGMREVLIIMLVEWIVVLLVAYCIDKVLSSGSWKCALFFLQRHDKKPPSQNPGFERQGSKVLVQTDKPDVRQEREKVEKLLKEGDPSYAIVSDHLKKVYPGKDGNPEQFAVRGLSLALARGECFGLLGPNGAGKTSFINMMIGLIKPTAGTALVEGLDISTEMNGIYASMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSALIQAVEESLKGVNLFHGGVAEKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRIGIFVDGSLQCIGNPKELKARYGGAYVFTMTTSPAHEGHVENMVKHLASGASKIYHLSGTQKFELPKHQVRIADVFQAVENAKSRFTVLAWGLADTTLEDVFIKVANGAESSDMLS 1599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28786006 28803006 + ClCG01G014460.2 Cla01g01430 265019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01430 1599 MobiDBLite consensus disorder prediction 533 561 - -
Cla01g01430 1599 MobiDBLite consensus disorder prediction 431 608 - -
Cla01g01430 1599 Pfam ABC-2 family transporter protein 903 1208 - -
Cla01g01430 1599 MobiDBLite consensus disorder prediction 501 515 - -
Cla01g01430 1599 Coils Coil 1599 1599 - -
Cla01g01430 1599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1277 1505 IPR027417 -
Cla01g01430 1599 MobiDBLite consensus disorder prediction 516 532 - -
Cla01g01430 1599 MobiDBLite consensus disorder prediction 1 32 - -
Cla01g01430 1599 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1277 1514 IPR003439 GO:0005524
Cla01g01430 1599 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 661 1598 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cla01g01430 1599 MobiDBLite consensus disorder prediction 579 608 - -
Cla01g01430 1599 Pfam Protein of unknown function (DUF4005) 540 623 IPR025064 -
Cla01g01430 1599 CDD ABC_subfamily_A 1281 1502 - -
Cla01g01430 1599 Pfam IQ calmodulin-binding motif 193 210 IPR000048 GO:0005515
Cla01g01430 1599 Pfam IQ calmodulin-binding motif 171 190 IPR000048 GO:0005515
Cla01g01430 1599 Pfam ABC transporter 1299 1443 IPR003439 GO:0005524
Cla01g01430 1599 SMART AAA_5 1307 1490 IPR003593 -
Cla01g01430 1599 Gene3D - 1266 1537 IPR027417 -
Cla01g01430 1599 MobiDBLite consensus disorder prediction 352 367 - -
Cla01g01430 1599 Gene3D - 167 216 - -
Cla01g01430 1599 ProSiteProfiles IQ motif profile. 193 215 IPR000048 GO:0005515
Cla01g01430 1599 MobiDBLite consensus disorder prediction 1 24 - -
Cla01g01430 1599 MobiDBLite consensus disorder prediction 431 454 - -
Cla01g01430 1599 ProSiteProfiles IQ motif profile. 169 197 IPR000048 GO:0005515
Cla01g01430 1599 SMART iq_5 191 212 IPR000048 GO:0005515
Cla01g01430 1599 SMART iq_5 168 190 IPR000048 GO:0005515
Cla01g01430 1599 ProSitePatterns ABC transporters family signature. 1416 1430 IPR017871 GO:0005524
Cla01g01430 1599 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 661 1598 - -
Cla01g01430 1599 MobiDBLite consensus disorder prediction 319 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01430 - - - csv:101218105 1493.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01430 Cla-Chr1:28786006 Cla06g01603 Cla-Chr6:29556243 4.09E-85 dispersed
Cla10g00477 Cla-Chr10:6286510 Cla01g01430 Cla-Chr1:28786006 5.21E-12 transposed
Cla11g01568 Cla-Chr11:29378354 Cla01g01430 Cla-Chr1:28786006 2.57E-10 transposed
Cla01g01430 Cla-Chr1:28786006 Cla06g01602 Cla-Chr6:29546501 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01430 Cla_Chr01 FPKM 46.075981 52.4981 16.002964 16.541531 10.472631 8.584676 8.868856 21.667562 23.952137 25.532293